DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pea and dhx38

DIOPT Version :9

Sequence 1:NP_610928.1 Gene:pea / 36561 FlyBaseID:FBgn0086895 Length:1242 Species:Drosophila melanogaster
Sequence 2:XP_002937626.2 Gene:dhx38 / 734019 XenbaseID:XB-GENE-990308 Length:1212 Species:Xenopus tropicalis


Alignment Length:1230 Identity:482/1230 - (39%)
Similarity:694/1230 - (56%) Gaps:164/1230 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 PGLALPNDTYSKKEESDDDEKVKAKPEKHSETHKKTDMSDVDAAMMELEALAPGEGATLVRPHKE 168
            |.|........||:.|.:::.|...|...|             :::.|:.||..:     |..:|
 Frog    15 PSLEAGGLVIKKKKSSSNEQHVFKAPAPRS-------------SLLGLDLLAAQK-----RKERE 61

  Fly   169 ------------VSSRDRHKR-RSRDRDTKRRSR-SREDRH---------------SDRRRSRSR 204
                        |||||..:| ||.||...:.|| |..|||               ::...:|:|
 Frog    62 EREQQEGEKKSKVSSRDWEERDRSPDRPNDKLSRGSHGDRHYRTPRVETPSYTGGVNEEFLARNR 126

  Fly   205 DKERRRR-----SRSRDNRRRSRSREDRDRDR-DRRHKSSSSRDHHERRRRSRSRSTERRDRRDR 263
            .:||.||     :.|:|:|:|   |::|.|:| ||..::.|.||....|...||   |....|.:
 Frog   127 QRERERREHGVYASSKDDRQR---RKERGREREDRSCRNRSERDSGSERSGRRS---EPESPRHK 185

  Fly   264 SRDCSEKMPPPSAAMTDDPEAGKIYSGKIANIVPFGCFVQLFGLRKRWEG-----------LVHI 317
            .||.|    .||.:..::.::|            :|.     ..|.:||.           ..|.
 Frog   186 PRDAS----TPSRSSWEEDDSG------------YGS-----SQRSQWESPSPAPSNRDSEKSHR 229

  Fly   318 SQL------RAE-GRVTDVTEVVTRNQTVK--VKVMSITGQKVSLSMKEVDQDSGKD-LNPLSHA 372
            |:.      |:| ||.::.:.:.|.:....  .......|....||.....|||..| :|.:|..
 Frog   230 SERESSRRERSERGRYSEESPLPTPSYKYNEWASDRRHLGSTPRLSQGRGKQDSDDDKINFMSEE 294

  Fly   373 P----EDDESLRDRN----PDGPFSSSTSMLNLQGNGMEGDEHESRKRVT-RISSP--------E 420
            .    |||:...||:    .:|...|..::.:...:.::..|.:.:|:.: |:|:.        |
 Frog   295 EQRQWEDDQRQADRDWYMMDEGFDESHNALTSTSEDYVKKREQQLQKQTSKRVSAQRRQINEDNE 359

  Fly   421 RWEIKQMISSGVLDRSEMPDFDEETGLLPKDEDDEADIEIEIVEEEPPFLSGHGRALHDLSPVRI 485
            |||..:|::|||:.|.|:   ||:.     :||:.|.:.:.:....||||.|.........||..
 Frog   360 RWETNRMLTSGVVQRLEV---DEDF-----EEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIP 416

  Fly   486 VKNPDGSLAQAAMMQSALSKERREQKMLQREQ--EIEAMPTSLN-----KNWID----PLPED-- 537
            |::....||..|...|.|.::.||||..::.|  ..|...|.|.     |..:|    |:.||  
 Frog   417 VRDATSDLAIIARKGSQLVRKHREQKERKKAQHKHWELAGTKLGDIMGVKKQVDEPDKPIAEDGA 481

  Fly   538 ----ESRSLAANMRGMAAAPPEVPEWKKHVIGGKKSSFGKKTDLTLVEQRQSLPIYKLRDDLIKA 598
                ..:..|.:||..:.|               .|.|.:|.  :|:||||.|||:.::.:|:..
 Frog   482 VDYKAEQKFADHMRERSEA---------------SSDFSRKK--SLMEQRQYLPIFAVQQELLTI 529

  Fly   599 VTDNQILIVIGETGSGKTTQITQYLGECGFTARGKIGCTQPRRVAAMSVAKRVAEEYGCRLGQEV 663
            :.||.|:||:||||||||||:||||.|.|:|..|.|.||||||||||||||||:||....||:||
 Frog   530 IRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIACTQPRRVAAMSVAKRVSEEMQVSLGEEV 594

  Fly   664 GYTIRFEDCTSPETIIKYMTDGMLLRECLMEAELKSYSVIMLDEAHERTIHTDVLFGLLKTAVQK 728
            ||.||||||||.:|:|||||||:||||||.||:|..||.:::||||||:::||||||||:..|.:
 Frog   595 GYAIRFEDCTSEKTLIKYMTDGILLRECLREADLDHYSAVIMDEAHERSLNTDVLFGLLREVVTR 659

  Fly   729 RPELKLIVTSATLDAVKFSQYFFKAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREP 793
            |.:|||||||||:||.||:.:|...|||.||||||||::|::|.|:.||::|::...:||||...
 Frog   660 RSDLKLIVTSATMDADKFATFFGNVPIFYIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGA 724

  Fly   794 PGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPAGSRKVVI 858
            .||||:|:.|||:|:...:.:.||::.| ...|.|.:||:||.|||::|.:||..||.|.||.::
 Frog   725 AGDILIFMPGQEDIEVTSDQIVERLEEL-DSAPPLAVLPIYSQLPSDLQAKIFQKAPDGVRKCIV 788

  Fly   859 ATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKTYRL 923
            ||||||||||:|||.:|:|.|:.|.||:|.:.|||:|.:.|||||.|.||:|||||||||:.|||
 Frog   789 ATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCYRL 853

  Fly   924 YTERAYRDEMLPTPVPEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLVMALEQLHSLSAL 988
            ||:.||::|:|.|.|||||||||:..||.||::|:.|||.|.|||.||.::::.::.||..|.||
 Frog   854 YTQSAYKNELLHTTVPEIQRTNLSNVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGAL 918

  Fly   989 DDEGLLTRLGRRMAEFPLEPNLSKMLIMSVALQCSDEILTIVSMLSVQNVFYRPKDKQALADQKK 1053
            |:.|.||..||.|.||||:|.||||||:|..:.||.|||.:||||||..:|||||.::..:||.:
 Frog   919 DNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSSEILIVVSMLSVPAIFYRPKGREEESDQVR 983

  Fly  1054 AKFNQAEGDHLTLLAVYNSWKNNKFSNAWCYENFVQIRTLKRSQDVRKQLLGIMDRHKLDVVSAG 1118
            .||...|.||||.|.|:..||||.:|:.||.::|:..:.:::.::||.||..||...::.:.|.|
 Frog   984 EKFAVPESDHLTYLNVFLQWKNNNYSSGWCNQHFIHAKAMRKVREVRAQLKDIMVSQRMSLSSCG 1048

  Fly  1119 KNSVRIQKAICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNR--QPEWVIYHELVQTTKE 1181
            .:...::|.||:.:|..||:......|..:......::||:|:||..  .|::::|||||.||||
 Frog  1049 SDWDIVRKCICAAYFHQAARLKGIGEYVNVRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKE 1113

  Fly  1182 YMREVTTIDPKWLVEFAPSFFRFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVRRRR 1241
            ||:.||.:|.:||.|..|.|:......| ::.:..:|.:...:..||.......::|.||
 Frog  1114 YMQCVTAVDGEWLAELGPMFYSIKHAGK-TRQENRRRAKEEVSAMEEEMMLAEEQLRARR 1172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
peaNP_610928.1 S1_DHX8_helicase 285..363 CDD:240189 17/97 (18%)
HrpA 573..1221 CDD:224557 340/649 (52%)
dhx38XP_002937626.2 HrpA 483..1131 CDD:224557 342/665 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D354219at2759
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X141
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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