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Protein Alignment pea and Dhx40

DIOPT Version :9

Sequence 1:	NP_610928.1	Gene:	pea / 36561	FlyBaseID:	FBgn0086895	Length:	1242	Species:	Drosophila melanogaster
Sequence 2:	NP_080467.3	Gene:	Dhx40 / 67487	MGIID:	1914737	Length:	779	Species:	Mus musculus

Alignment Length:	693	Identity:	296/693 - (42%)
Similarity:	417/693 - (60%)	Gaps:	68/693 - (9%)

- Green bases have known domain annotations that are detailed below.

  Fly   585 SLPIYKLRDDLIKAVTDNQILIVIGETGSGKTTQITQYLGECGFTARGKIGCTQPRRVAAMSVAK 649
            :.||.|.|..||:||.||..|||.|.||||||||:.:||.|.||:..|.||.||||:|||:|||:
Mouse    52 TFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAAISVAQ 116

  Fly   650 RVAEEYGCRLGQEVGYTIRFEDCTSPETIIKYMTDGMLLRECLMEAELKSYSVIMLDEAHERTIH 714
            |||||..|.||.:|||.:||:||:|.||.|||||||.||:..|.:..|..:|||:||||||||:.
Mouse   117 RVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLSKFSVIILDEAHERTLT 181

  Fly   715 TDVLFGLLKTAVQ-----KRPELKLIVTSATLDAVKFSQYFFKAPIFTIPGRTFPVEVLYTK--- 771
            ||:||||||...|     ::..||::|.|||::..|.|.:|...|||.||||.:||...:..
Mouse   182 TDILFGLLKKLFQDKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIG 246

  Fly   772 ---EPETDYLDASLITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPD-------VP 826
               ...|.|:.|.:...|.|||.|..||||:|||||.||:.:||:|::..:|:..|       :.
Mouse   247 PRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLD 311

  Fly   827 ELIILPVYSALPSEMQTRIFDPAPAGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTG 891
            .|:|||.|.::.::.|.|||.|.|.|.||.||:|||:.||||||||.||||.|||||..:|.:.|
Mouse   312 GLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLG 376

  Fly   892 MDSLVVTPISQAAAKQRAGRAGRTGPGKTYRLYTERAYRDEMLPTPVPEIQRTNLATTVLQLKTM 956
            :|.|.|.|||::.|.||:||||||..||.:|:|::..:...|....:|||:||:|.:.||.||.:
Mouse   377 LDILEVVPISKSEALQRSGRAGRTASGKCFRIYSKEFWSQCMPDHVIPEIKRTSLTSVVLTLKCL 441

  Fly   957 GINDLLHFDFMDAPPVESLVM-ALEQLHSLSALDDEGLLTRLGRRMAEFPLEPNLSKMLIMSVAL 1020
            .|:|::.|.::| ||.|.|:: ||:||:...|:|..|.:||||..|.||||.|:|:..:|.:.:|
Mouse   442 AIHDVIRFPYLD-PPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIRAASL 505

  Fly  1021 QCSDEILTIVSMLSVQNVFYRPKDKQALADQKKAKFNQAE--------GDHLTLLAVYNSWKNNK 1077
            .|.|.:|.|.:||||:|||.||.|.:.   ||:|:....|        .|..||..::...|::.
Mouse   506 DCEDLLLPIAAMLSVENVFIRPVDPEY---QKEAEQRHRELAAKAGGFNDFATLAVIFEQCKSSG 567

  Fly  1078 FSNAWCYENFVQIRTLKRSQDVRKQLLGIMDRHK------LDVVSAGKNSVRIQKAICSGFFRNA 1136
            ...:||.::::..|.|..:..|..||..::.:.|      .:.....|:.| :::.:|:|:|:|.
Mouse   568 APASWCQKHWIHWRCLFSAFRVEAQLRELIRKLKQQSDFPRETFEGPKHEV-LRRCLCAGYFKNV 631

  Fly  1137 AKKDPQEGYRTLVDSQ--VVYIHPSSALFNRQP--EWVIYHELVQTTKEYMREVTTIDPKWLVEF 1197
            |::.....:.|: |.:  .|:|||||||..::.  ||:|:||::.|||.|.|.|..|..:|:.:.
Mouse   632 ARRSVGRTFCTM-DGRGSPVHIHPSSALHEQETKLEWIIFHEVLVTTKVYARIVCPIRYEWVRDL 695

  Fly  1198 APSFFRFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVRRR 1240
            .|                         |..|.||..:|.|.||
Mouse   696 LP-------------------------KLHELNAHDLSSVARR 713

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.