DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pea and l(1)G0007

DIOPT Version :9

Sequence 1:NP_610928.1 Gene:pea / 36561 FlyBaseID:FBgn0086895 Length:1242 Species:Drosophila melanogaster
Sequence 2:NP_572947.1 Gene:l(1)G0007 / 32373 FlyBaseID:FBgn0026713 Length:1222 Species:Drosophila melanogaster


Alignment Length:1201 Identity:479/1201 - (39%)
Similarity:648/1201 - (53%) Gaps:169/1201 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 EKVKAKPEKHSE------THKKTDMSDVDAAMMELEALAPGEGATLV--RPHKEVSSRDRHKRRS 179
            :|:.||.....|      :.|.::..|........:|.|.|..:...  :|..:...:.|.:.|.
  Fly    51 DKLAAKRRAEKERSERLISFKDSEFDDTGGGSSTPQANASGASSEFAFKKPDTKSFEKLRGQLRE 115

  Fly   180 RDRDT---------KRRSRSREDRHSDRRRSRSRDKERRRRSRSRD---NRRRSRSREDRDRDRD 232
            ...||         |.|.|.||....||:|..........|.|.||   :|||.|.| |||||||
  Fly   116 HKDDTPSHTGGVSEKARERLREHIQRDRKRGPVSSTAAEGRDRDRDWDRDRRRDRDR-DRDRDRD 179

  Fly   233 RRHKSSSSRDHHERRRRSRSRSTERRDRRDRSRDCSEKMPPPSAAMTDDPEAGKIYSGKIANIVP 297
            ||        .|..|.|.|.||.:|...|||.||.|  |...|.....:|......||.|:| ..
  Fly   180 RR--------QHRERERDRHRSWDRDRGRDRDRDRS--MSERSVHTPREPGTPGGSSGGISN-SS 233

  Fly   298 FGCFVQLFGLRKR-WE--------------GLVHISQLRAEGRVTDV---TEVVTRNQTVKVKVM 344
            :......||.||. |:              .:......|..||..|.   |.....||...    
  Fly   234 WDDEDGEFGQRKSDWDMPTPRRHGNKSGDWSVRSGGSRRNHGRQDDTVRPTPAHRYNQWAH---- 294

  Fly   345 SITGQKVSLSMKEVDQDSGKDLNPLSHAPED------------------DESLRDRNPDGPFSSS 391
               |:|.|            ...|....||.                  ||...|.|  .||...
  Fly   295 ---GRKRS------------GATPWGEDPESLDLWEEEQRRLDREWYNIDEGYDDEN--NPFGGP 342

  Fly   392 TSMLNLQGNGMEGDEHESRKRVTRISSPER--------WEIKQMISSGVLDRSEMPDFDEETGLL 448
            .|..     ..:.:|...:||..|||:.:|        ||..:|::|||:....:.|        
  Fly   343 NSEY-----FRKREEQLEQKRTKRISAQQRQNNRDNELWERNRMLTSGVVTLISVND-------- 394

  Fly   449 PKDEDDEADIEIEIVEEE--PPFLSGHGRALHDLSPVRIVKNPDGSLAQAAMMQSALSKERREQK 511
              |.|:||...:.::...  ||||.|.........||..||:|...:|..|...|||.:..||||
  Fly   395 --DFDEEALERVHLLVHHIIPPFLDGRIVFTKQPEPVVPVKDPTSDMALLARKGSALVRNYREQK 457

  Fly   512 MLQREQEIEAMPTSLNKNW-------------IDPLPEDESR--------------SLAANMRGM 549
            ..::.|:         |:|             ..|..||:.|              ..|.:||..
  Fly   458 ERRKAQK---------KHWELSGTKLGNIMGVQRPQDEDDMRFDKEKDKADYRKDQKFADHMRDQ 513

  Fly   550 AAAPPEVPEWKKHVIGGKKSSFGKKTDLTLVEQRQSLPIYKLRDDLIKAVTDNQILIVIGETGSG 614
            ..              |.||.|.:|.  |:.|||:.||::..|.:|:..:.:|.::|::||||||
  Fly   514 DT--------------GGKSDFSRKK--TISEQRRFLPVFASRQELLNVIRENSVIIIVGETGSG 562

  Fly   615 KTTQITQYLGECGFTARGKIGCTQPRRVAAMSVAKRVAEEYGCRLGQEVGYTIRFEDCTSPETII 679
            ||||:||||.|.|::.||.||||||||||||||||||::|...:||::|||.||||||||..|:|
  Fly   563 KTTQLTQYLHEDGYSKRGMIGCTQPRRVAAMSVAKRVSDEMDTQLGEDVGYAIRFEDCTSERTVI 627

  Fly   680 KYMTDGMLLRECLMEAELKSYSVIMLDEAHERTIHTDVLFGLLKTAVQKRPELKLIVTSATLDAV 744
            ||||||:||||.|.:.||.|||.|::||||||::.||||||||:..|.:|.:|||||||||:|:.
  Fly   628 KYMTDGILLRESLRDPELDSYSAIIMDEAHERSLSTDVLFGLLREIVARRHDLKLIVTSATMDSS 692

  Fly   745 KFSQYFFKAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDILLFLTGQEEIDT 809
            ||:.:|...|.||||||||||:|:::|....||:::::...:|:||....||:|:|:.|||:|:.
  Fly   693 KFATFFGNVPTFTIPGRTFPVDVMFSKNTCEDYVESAVKQALQVHLTPNEGDMLIFMPGQEDIEV 757

  Fly   810 ACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPAGSRKVVIATNIAETSLTIDGIFY 874
            .||:|.||:..: .:.|.|.|||:||.|||::|.:||..:..|.||.|:||||||||||:|||.|
  Fly   758 TCEVLEERLAEI-DNAPALSILPIYSQLPSDLQAKIFQKSSDGLRKCVVATNIAETSLTVDGIIY 821

  Fly   875 VVDPGFVKQKVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKTYRLYTERAYRDEMLPTPVP 939
            |:|.|:.|.||||.:.|||:|.:.|||||.|.||:|||||||||:.|||||:|.|:||:|...||
  Fly   822 VIDSGYCKLKVYNPRIGMDALQIYPISQANANQRSGRAGRTGPGQAYRLYTQRQYKDELLALTVP 886

  Fly   940 EIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLVMALEQLHSLSALDDEGLLTRLGRRMAEF 1004
            ||||||||.|||.||::|:.|||.|.|||.||.::::.:|.||..|.|||..|.||.|||:||||
  Fly   887 EIQRTNLANTVLLLKSLGVVDLLQFHFMDPPPQDNILNSLYQLWILGALDHTGALTTLGRQMAEF 951

  Fly  1005 PLEPNLSKMLIMSVALQCSDEILTIVSMLSVQNVFYRPKDKQALADQKKAKFNQAEGDHLTLLAV 1069
            ||:|...:|||::..:.||.|:|.|||||||.::|||||.::..||..:.||.:.|.||||.|.|
  Fly   952 PLDPPQCQMLIVACRMGCSAEVLIIVSMLSVPSIFYRPKGREDEADGVREKFQRPESDHLTYLNV 1016

  Fly  1070 YNSWKNNKFSNAWCYENFVQIRTLKRSQDVRKQLLGIMDRHKLDVVSAGKNSVRIQKAICSGFFR 1134
            |..|:.|.:|:.||.|:|:.|:.:::.::||:||..||.:..|.|:|.|.:...::|.|||.:|.
  Fly  1017 YQQWRQNNYSSTWCNEHFIHIKAMRKVREVRQQLKDIMTQQNLSVISCGIDWDIVRKCICSAYFY 1081

  Fly  1135 NAAKKDPQEGYRTLVDSQVVYIHPSSALF--NRQPEWVIYHELVQTTKEYMREVTTIDPKWLVEF 1197
            .||:......|..|......::||:|||:  ...|::|:||||:.|.||||:..|.:|..||.|.
  Fly  1082 QAARLKGIGEYVNLRTGMPCHLHPTSALYGLGTTPDYVVYHELIMTAKEYMQCATAVDGYWLAEL 1146

  Fly  1198 APSFFRFSDPTKLSKFKKNQRLEPLYNKYEE 1228
            .|.||...:..:..:.||.|..|.|....|:
  Fly  1147 GPMFFSVKESGRSGREKKKQAAEHLKEMEEQ 1177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
peaNP_610928.1 S1_DHX8_helicase 285..363 CDD:240189 19/95 (20%)
HrpA 573..1221 CDD:224557 340/649 (52%)
l(1)G0007NP_572947.1 DEXDc 529..715 CDD:214692 118/185 (64%)
DEXDc 551..689 CDD:238005 94/137 (69%)
HELICc 722..870 CDD:238034 79/148 (53%)
HA2 932..1014 CDD:214852 45/81 (56%)
OB_NTP_bind 1048..1148 CDD:285018 38/99 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45468084
Domainoid 1 1.000 55 1.000 Domainoid score I637
eggNOG 1 0.900 - - E1_COG1643
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 234 1.000 Inparanoid score I130
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D13788at6656
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 1 1.000 - - otm51353
orthoMCL 1 0.900 - - OOG6_100085
Panther 1 1.100 - - P PTHR18934
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X141
1110.800

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