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Protein Alignment pea and Dhx40

DIOPT Version :9

Sequence 1:	NP_610928.1	Gene:	pea / 36561	FlyBaseID:	FBgn0086895	Length:	1242	Species:	Drosophila melanogaster
Sequence 2:	NP_001005873.1	Gene:	Dhx40 / 287595	RGDID:	1359618	Length:	779	Species:	Rattus norvegicus

Alignment Length:	690	Identity:	297/690 - (43%)
Similarity:	417/690 - (60%)	Gaps:	62/690 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly   585 SLPIYKLRDDLIKAVTDNQILIVIGETGSGKTTQITQYLGECGFTARGKIGCTQPRRVAAMSVAK 649
            :.||.|.|..||:||.||..|||.|.||||||||:.:||.|.||:..|.||.||||:|||:|||:
  Rat    52 TFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAAISVAQ 116

  Fly   650 RVAEEYGCRLGQEVGYTIRFEDCTSPETIIKYMTDGMLLRECLMEAELKSYSVIMLDEAHERTIH 714
            |||||..|.||.:|||.:||:||:|.||.|||||||.||:..|.:..|..:|||:||||||||:.
  Rat   117 RVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLNKFSVIILDEAHERTLT 181

  Fly   715 TDVLFGLLKTAVQ-----KRPELKLIVTSATLDAVKFSQYFFKAPIFTIPGRTFPVEVLYTK--- 771
            ||:||||||...|     ::..||::|.|||::..|.|.:|...|||.||||.:||...:..
  Rat   182 TDILFGLLKKLFQDKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREKFCNLIG 246

  Fly   772 ---EPETDYLDASLITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPD-------VP 826
               ...|.|:.|.:...|.|||.|..||||:|||||.||:.:||:|::..:|:..|       :.
  Rat   247 PRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLD 311

  Fly   827 ELIILPVYSALPSEMQTRIFDPAPAGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTG 891
            .|:|||.|.::.::.|.|||.|.|.|.||.||:|||:.||||||||.||||.|||||..:|.:.|
  Rat   312 GLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLG 376

  Fly   892 MDSLVVTPISQAAAKQRAGRAGRTGPGKTYRLYTERAYRDEMLPTPVPEIQRTNLATTVLQLKTM 956
            :|.|.|.|||::.|.||:||||||..||.:|:|::..:...|....:|||:||:|.:.||.||.:
  Rat   377 LDILEVVPISKSEALQRSGRAGRTASGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCL 441

  Fly   957 GINDLLHFDFMDAPPVESLVM-ALEQLHSLSALDDEGLLTRLGRRMAEFPLEPNLSKMLIMSVAL 1020
            .|:|::.|.::| ||.|.|:: ||:||:...|:|..|.:||||..|.||||.|:|:..:|.:.:|
  Rat   442 AIHDVIRFPYLD-PPNERLILEALKQLYQCDAIDRSGHVTRLGLSMVEFPLPPHLTCAVIRAASL 505

  Fly  1021 QCSDEILTIVSMLSVQNVFYRPKDK--QALADQKKAKFNQAEG---DHLTLLAVYNSWKNNKFSN 1080
            .|.|.:|.|.:||||:|||.||.|.  |..|:||..:.....|   |..||..::...|::....
  Rat   506 DCEDLLLPIAAMLSVENVFIRPVDPEYQKEAEQKHRELAAKAGGFNDFATLAVIFEQCKSSGAPA 570

  Fly  1081 AWCYENFVQIRTLKRSQDVRKQLLGIMDRHK------LDVVSAGKNSVRIQKAICSGFFRNAAKK 1139
            :||.::::..|.|..:..|..||..::.:.|      .:.....|:.| :::.:|:|:|:|.|::
  Rat   571 SWCQKHWIHWRCLFSAFRVEAQLRELIRKLKQQSDFPRETFEGPKHEV-LRRCLCAGYFKNVARR 634

  Fly  1140 DPQEGYRTLVDSQ--VVYIHPSSALFNRQP--EWVIYHELVQTTKEYMREVTTIDPKWLVEFAPS 1200
            .....:.|: |.:  .|:|||||||..::.  ||:|:||::.|||.|.|.|..|..:|:.:..|
  Rat   635 SVGRTFCTM-DGRGSPVHIHPSSALHEQETKLEWIIFHEVLVTTKVYARIVCPIRYEWVRDLLP- 697

  Fly  1201 FFRFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVRRR 1240
                                    |..|.||..:|.|.||
  Rat   698 ------------------------KLHELNAHDLSSVARR 713

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.