DRSC/TRiP Functional Genomics Resources

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Protein Alignment pea and gih35

DIOPT Version :10

Sequence 1:NP_610928.1 Gene:pea / 36561 FlyBaseID:FBgn0086895 Length:1242 Species:Drosophila melanogaster
Sequence 2:NP_593629.1 Gene:gih35 / 2542874 PomBaseID:SPAC20H4.09 Length:647 Species:Schizosaccharomyces pombe


Alignment Length:642 Identity:253/642 - (39%)
Similarity:395/642 - (61%) Gaps:22/642 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   570 SFGKKTDLTLVEQRQSLPIYKLRDDLIKAVTDNQILIVIGETGSGKTTQITQYLGECGFTAR-GK 633
            |....|:..|..|::.|||.|.|:.|:.||..|||.||:|.||.||||||.|:|.|.|:.:: |.
pombe     9 SLSTLTNTPLNIQKKLLPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQFLYEAGWASQNGI 73

  Fly   634 IGCTQPRRVAAMSVAKRVAEEYGCRLGQEVGYTIRFEDCTSPETIIKYMTDGMLLRECLMEAELK 698
            ||||||||:.|.||::||:.|.....|...||:|:|:...|.:|.|||||||:||.|...:..|:
pombe    74 IGCTQPRRLVAKSVSERVSLELNSPPGSLCGYSIQFDHNVSEKTKIKYMTDGILLNEIFFDPLLE 138

  Fly   699 SYSVIMLDEAHERTIHTDVLFGLLKTAVQKRPELKLIVTSATLDAVKFSQYFFKAPIFT--IPGR 761
            .||:::|||.||||:.||:|.|:||..::||.:.:|:::||::||.|.||:|.:..:.|  |.|:
pombe   139 RYSIVILDEVHERTLSTDLLLGVLKRILEKRNDFRLVLSSASVDANKLSQFFGQDKVCTMSIEGK 203

  Fly   762 TFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPDVP 826
            .||||.|:.::|..:|:|:::.||:.|:...||||||:||:|::||:...:.:.:.:.....|..
pombe   204 LFPVETLFLQKPTENYVDSAIETVININSTYPPGDILVFLSGRKEIEYCIKKIEDSLIHASEDCQ 268

  Fly   827 ELIILPVYSALPSEMQTRIFDPAPAGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTG 891
            .|:.||:::.|..:.|.|:|:......|||:.:|||||||:|||||.||||.||.||::||..|.
pombe   269 TLVPLPLHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVVDSGFNKQRIYNPYTR 333

  Fly   892 MDSLVVTPISQAAAKQRAGRAGRTGPGKTYRLYTERAY---RDEMLPTPVPEIQRTNLATTVLQL 953
            ...|:..|||:::|.||:||||||..||.:|||||:||   ::|.    ..:|...:::..||.|
pombe   334 TSKLINVPISKSSAIQRSGRAGRTMRGKVFRLYTEKAYSLMKEEF----EADILNCDMSPLVLFL 394

  Fly   954 KTMGINDLLHFDFMDAPPVESLVMALEQLHSLSALDDEGLLT-RLGRRMAEFPLEPNLSKMLIMS 1017
            |.:|:.::|.|.|...||...|:.|||.|:.|..||:.|.|| .||.:::...|:.|:||.|:.|
pombe   395 KGLGLKNILQFPFFVRPPTVHLMAALEDLYLLGVLDESGNLTDPLGIQISNSFLDANISKALLTS 459

  Fly  1018 VALQCSDEILTIVSMLSVQNVFYRP----KDKQALADQKKAKFNQAEGDHLTLLAVYNSWKNNKF 1078
            ....|:.|||:|.|:|:...|||.|    |:...:|   .:.|...|||.:|.|.|:.|:..||.
pombe   460 NQFGCTHEILSIASILTAGEVFYNPTSSSKNDAFVA---HSSFFANEGDIITALNVFESFVGNKK 521

  Fly  1079 SNAWCYENFVQIRTLKRSQDVRKQLLGIMDRHKLDVVS--AGKNSVRIQKAICSGFFRNAAKKDP 1141
            ...||.:|::..:||:::.|:|..|:..:::..:....  ...:..:|.|.:..||.||.|....
pombe   522 DLQWCRKNYLNYQTLRQALDIRTHLVRFLNKFSIPTAQRLPSSDCSKILKCLLDGFVRNVAHLQN 586

  Fly  1142 QEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQT-TKEYMREVTTIDPKWLVEF 1197
            ...|:|:...| |::..||.|..::..|::|...|:: |:.:::.::.|:..||.::
pombe   587 DGSYKTIGGKQ-VWLDSSSVLHEKKTPWIMYSSAVESETQIFVKNISKIESFWLDKY 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
peaNP_610928.1 GH2-like_DHX8 7..74 CDD:409668
S1_DHX8_helicase 285..363 CDD:240189
HrpA 578..>1203 CDD:441249 251/634 (40%)
gih35NP_593629.1 HrpA 25..>627 CDD:441249 246/609 (40%)
Blue background indicates that the domain is not in the aligned region.

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