DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pea and rha-1

DIOPT Version :9

Sequence 1:NP_610928.1 Gene:pea / 36561 FlyBaseID:FBgn0086895 Length:1242 Species:Drosophila melanogaster
Sequence 2:NP_495890.2 Gene:rha-1 / 174417 WormBaseID:WBGene00004355 Length:1301 Species:Caenorhabditis elegans


Alignment Length:1028 Identity:247/1028 - (24%)
Similarity:433/1028 - (42%) Gaps:228/1028 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   321 RAEGR----VTDVTEVVTRNQTVKVKVMSITGQKVSLSMKEVDQDSGKDLNPLSHAPEDD--ESL 379
            |.||.    :|...|.:..::||.:|.....|..:..|.|.:::...|     ...|:.:  ..:
 Worm   135 RNEGTHEQYITQKAEEIAASETVDLKSEIHGGWTMENSKKALNEFLQK-----MRLPQVNYGTKI 194

  Fly   380 RDRNPDGPFSSSTSML------NLQGNGMEGDEHESRKRVTRISSPERWEIKQMIS-------SG 431
            |:.|......::..:.      ||.|.|.     .|.|:|:..:.... .::||..       ||
 Worm   195 RESNTVKTMETTAQIFVPQINKNLVGKGT-----GSNKKVSEAACAMN-IVRQMFHLNIMQSYSG 253

  Fly   432 VLDRSEMPDFDEETGLLPKDEDDEADIEIEIVEEEPPFLSGHGRALHDLSPVRIV-KNPDGSLAQ 495
            .:.:|::....|....:|:      |:...:.|    ::...|..|.:::..... :.|...|..
 Worm   254 PIKKSKVSTLPEIAISIPE------DLSTRVTE----YVRSCGLELPEINETSATPEAPTSLLTD 308

  Fly   496 AAMMQSALSKERREQKMLQREQEIEAMPTSLNKNWIDPLPE---------DESRSLAANMRGMAA 551
            ..:.|..:|:                :.::.|.:|..||..         ||......:|..::.
 Worm   309 VKLAQFPVSE----------------ICSASNISWAPPLQNWNPWRASNIDEEPLAFMSMEQISQ 357

  Fly   552 APPEVPEWKKHVIGGKKSSFGKKTDLTLVEQRQSLPIYKLRDDLIKAVTDNQILIVIGETGSGKT 616
            ...|..::|:          |:..| .:..||..||:.:.|:::::.|.:|::.::.||||.||:
 Worm   358 RIMEKEDFKR----------GEALD-KITAQRGELPVAQYRENIVQTVAENRVTLIKGETGCGKS 411

  Fly   617 TQITQYLGE--------CGFTARGKIGCTQPRRVAAMSVAKRVAEEYGCRLGQEVGYTIRFEDCT 673
            ||:.|:|.|        ..|.|    ..:||||::|:|:|:|||.|.|..:|:..||.:||:..|
 Worm   412 TQVAQFLLESFLENSNGASFNA----VVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSAT 472

  Fly   674 -SPETIIKYMTDGMLLRECLMEAELKSYSVIMLDEAHERTIHTDVLFGLLKTAVQKRPELKLIVT 737
             .|...|.:.|.|:|||  :||..|:..|.:::||.|||.:.||.:..:|:..:....:|::::.
 Worm   473 PRPYGSIMFCTVGVLLR--MMENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLM 535

  Fly   738 SATLDAVKFSQYFFK------APIFTIPGRTFPVEVLYTKE------------------------ 772
            |||:|...|:.:|..      .|:.|:.||||||:..|.::                        
 Worm   536 SATIDTDLFTNFFSSIPDVGPTPVITMHGRTFPVQSFYLEDILHNLQHMPEEPDQKKRKKGGPPP 600

  Fly   773 PETD-------------------YLDASLITVM------------------QIHLREPPGDILLF 800
            |:.|                   .::.||.|.|                  .|..|...|.:|:|
 Worm   601 PDDDEGDEEVDDKGRNMNILTDPSINESLKTAMSRISEKDIPFGVIEAILNDIASRGVDGAVLVF 665

  Fly   801 LTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPAGSRKVVIATNIAET 865
            |.|..||.|.|..|.|..:....:..|  |||::|.|.|:.|.::|:..| |.||::::||||||
 Worm   666 LPGWAEIMTLCNRLLEHQEFGQANKYE--ILPLHSQLTSQEQRKVFNHYP-GKRKIIVSTNIAET 727

  Fly   866 SLTIDGIFYVVDPGFVKQKVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKTYRLYTERAYR 930
            |:|||.:.||:|....|:::|.|...|........|:....||.|||||...|..:.|.::..:.
 Worm   728 SITIDDVVYVIDSCKAKERMYTSNNNMVHFATVWASKTNVIQRRGRAGRVRAGYAFHLCSKMRFE 792

  Fly   931 -------DEMLPTPVPEIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLVMALEQLHSLSAL 988
                   .|||..|:.:|     |.|:..|:...:.:.|. ..:..||.:.:|.:...|.::.||
 Worm   793 ALDDHGTAEMLRIPLHQI-----ALTIKLLRLGSVGEFLG-KALQPPPYDMVVESEAVLQAMGAL 851

  Fly   989 DDEGLLTRLGRRMAEFPLEPNLSKMLIMSVALQCSDEILTIVSMLSVQNVFYRPKDK---QALAD 1050
            |....||.||:.:|..|:||.::|:||:..||.....:..:.|.:|....|. |::|   :....
 Worm   852 DRNLELTSLGKMLARMPIEPVIAKVLILGTALGAGSVMCDVASAMSFPTPFV-PREKHHSRLSGT 915

  Fly  1051 QKKAKFNQAEGDHLTLLAVYNSWK----------NNKFSNAWCYENFVQIRTLKRSQDVRKQLLG 1105
            |:|...|:. .||:.:::|...::          ..:|...:...|.|    ||.:...|:||:.
 Worm   916 QRKFAGNKF-SDHVAIVSVIQGYREAVQMGASAAEREFCERYSLSNPV----LKMTDGARRQLID 975

  Fly  1106 IMDRH-----------KLDVVSAGKNSVRIQKAICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPS 1159
            ::...           .::|....:....::..:....:.|.|.   ..|.|     :|:.|..|
 Worm   976 VLRNQCSFPEDILFDISVNVNGPDRELNLMRSLLVMALYPNVAY---YVGKR-----KVLTIEQS 1032

  Fly  1160 SALFNRQPEWV---------------IYHELVQTTKEYMREVTTIDPKWLVEF 1197
            |||.|:....|               ::.|.|:|.....::::.|....|:.|
 Worm  1033 SALINKYSMLVPMNNRQEMDFPSPLLVFTEKVRTRCISCKQMSVISAIQLLVF 1085

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
peaNP_610928.1 S1_DHX8_helicase 285..363 CDD:240189 11/45 (24%)
HrpA 573..1221 CDD:224557 200/747 (27%)
rha-1NP_495890.2 DSRM 6..71 CDD:214634
DSRM 173..243 CDD:214634 13/80 (16%)
HrpA 337..>974 CDD:224557 186/668 (28%)
DEXDc 398..539 CDD:238005 53/146 (36%)
Helicase_C 649..739 CDD:278689 38/92 (41%)
HA2 847..931 CDD:214852 26/85 (31%)
OB_NTP_bind 971..1086 CDD:285018 21/123 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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