DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pea and dhx57

DIOPT Version :10

Sequence 1:NP_610928.1 Gene:pea / 36561 FlyBaseID:FBgn0086895 Length:1242 Species:Drosophila melanogaster
Sequence 2:NP_001163976.1 Gene:dhx57 / 100124795 XenbaseID:XB-GENE-976876 Length:1180 Species:Xenopus tropicalis


Alignment Length:988 Identity:271/988 - (27%)
Similarity:437/988 - (44%) Gaps:231/988 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   300 CFVQLFGLRKRWEGLVHISQLRAEGRVTDVT--EVVTRNQTVKVKVMSITGQK-----------V 351
            |..:.||:|.:.:.:           .:|.|  |.:.|.|.....:.||.|:|           |
 Frog   225 CLSETFGIRTKTQRM-----------ASDFTVEECLERRQEEAFVLQSICGEKFVERIPNKVWTV 278

  Fly   352 SLSM--------KEVDQDSGKDLNPLSHAPED-------DESLRDRNP-----DGPFSSSTSMLN 396
            .|.|        |...:||.|||  ....|.:       .|:.|..:.     :.|..:.....:
 Frog   279 GLEMDYLTKRLQKPKKKDSDKDL--FQQMPRNICKYYMKGENCRFGSKCRFKHEAPKQNFKDESH 341

  Fly   397 LQGNGMEGDEHESRKRVTRISS-PER------WEIKQMISSGVLDRSEMPDFDEETGL-LPKDED 453
            |..||.....:|...|..:.:. |.:      :.:.:.:|.|.  |..:.::..|..| :.:..|
 Frog   342 LCANGNNNCLYELEVRFPKDNKYPYQAPLLAFYSVNENLSMGC--RLHITEYLYEKALNIAQTSD 404

  Fly   454 DEADIEIEIVEEE-----------------PPFLSGHGRALHDL--SPVRIVKNPDGSLAQAAMM 499
            ......:..:|:|                 ||.|.   .|..|.  :||..:..|  .......:
 Frog   405 PAVYTLVSCLEDEDEIVKLLANTHHKYSIPPPLLL---TATSDTRKNPVITINKP--VAPDKPSL 464

  Fly   500 QSALSKERREQKMLQREQEIEAMPTSLNKNWIDPLPEDESRSLA------ANMRGMAAAPPEVPE 558
            .|..|..|:.||.::.:   .:.|...:::.:|.|   ||.|:.      ||::...|       
 Frog   465 LSYPSGARKGQKPIKMD---ISKPNDTDEDSLDDL---ESESVLVENESYANLKKKQA------- 516

  Fly   559 WKKHVIGGKKSSF-----------GKKTD---LTLVEQRQSLPIYKLRDDLIKAVTDNQILIVIG 609
             ||:.....|:..           .|||.   .:::|:||.||.::.:|.:::.::..|:|:|.|
 Frog   517 -KKYSFNSNKAVAAENAKICKHYRAKKTTRNYQSMLEERQKLPAWQKQDQILELLSKYQVLVVSG 580

  Fly   610 ETGSGKTTQITQYLGECGFTAR----GKIGCTQPRRVAAMSVAKRVAEEYGCRLGQEVGYTIRFE 670
            .||.||||||.|::.:......    ..|.||||||::|:|||:|||:|...|:|..|||.||.|
 Frog   581 MTGCGKTTQIPQFILDASLKGPPSHVSNIICTQPRRISAISVAERVAQERAERVGISVGYQIRLE 645

  Fly   671 DCTSPETIIKYMTDGMLLRECLMEAELKSYSVIMLDEAHERTIHTDVLFGLLKTAVQKRPELKLI 735
            ...|..|.:.|.|.|:|||....:..|::.:.:::||.||||..:|.|..:||..:..||:||:|
 Frog   646 SVKSAATRLLYCTTGVLLRRLEGDTTLQNVTHVVVDEVHERTEESDFLLLVLKDVMVLRPDLKII 710

  Fly   736 VTSATLDAVKFSQYFFKAPIFTIPGRTFPVE----------VLYTKEPETDY------------- 777
            :.||||:|..||.||...|:..||||||||:          ..|..|..:.|             
 Frog   711 LMSATLNAELFSCYFQDCPVLHIPGRTFPVDQYFLEDAIAKTRYVLEDGSPYQRSSKQLPGPDSA 775

  Fly   778 ------------------LDASL-----------ITVMQIHLRE--------------------- 792
                              :.:||           :...|::::|                     
 Frog   776 RGKKGNSYNELLDELEQQISSSLRIQDSKIVKDSVPDQQLNVKELSVRYNGISKSVIKTLSSMDL 840

  Fly   793 ----------------------PPGDILLFLTGQEEIDTACEILYERMKS----LGPDVPELIIL 831
                                  |||.:|:||.|..||.|    ||::::|    ........:|.
 Frog   841 DKINLDLIEALLEWIVNGDHSYPPGAVLVFLPGLAEIKT----LYDQLQSNALFNNRRSKRCVIY 901

  Fly   832 PVYSALPSEMQTRIFDPAPAGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMDSLV 896
            |::|:|.|:.|..:|...|.|..|::|:|||||||:|||.:.||:|.|.:::|.|:....|:||.
 Frog   902 PLHSSLSSDEQQSVFLKPPPGVTKIIISTNIAETSITIDDVVYVIDSGKMREKRYDPGKSMESLE 966

  Fly   897 VTPISQAAAKQRAGRAGRTGPGKTYRLYTERAYRDEMLPTPVPEIQRTNLATTVLQLKTMGI--- 958
            .|.:|:|.|.||.|||||...|..:.|:|...|:.::|...:|||||..|....|::|.:.:   
 Frog   967 DTWVSRANAMQRKGRAGRVASGVCFHLFTSHHYQYQLLDQQLPEIQRIPLEQLCLRIKILEMFSE 1031

  Fly   959 --NDLLHFDFMDAPPVESLVMALEQLHSLSALDDEGLLTRLGRRMAEFPLEPNLSKMLIMSVALQ 1021
              .||:....::.|.:|||..:..:|..|.||..|..||.||..:|..|::..:.|:::.....:
 Frog  1032 CRLDLVFARLIEPPRMESLHASKIRLQDLGALTKEEKLTPLGYHLASLPVDVRIGKLMLFGAIFR 1096

  Fly  1022 CSDEILTIVSMLSVQNVFYRPKDKQALADQKKAKFNQAEGDHLTLLAVYNSW-----KNNKFSNA 1081
            |.|..|||.:.|:.::.|..|.||:..|::||.:|..|..|||.||..|.:|     ::::.:..
 Frog  1097 CLDPALTIAASLAFKSPFVCPWDKKEEANKKKQEFATANSDHLALLQAYQAWSSVIKESSRAAYQ 1161

  Fly  1082 WCYENFVQIRTLK 1094
            :|.:||:.:|.|:
 Frog  1162 YCRDNFLSVRVLQ 1174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
peaNP_610928.1 GH2-like_DHX8 7..74 CDD:409668
S1_DHX8_helicase 285..363 CDD:240189 18/83 (22%)
HrpA 578..>1203 CDD:441249 203/630 (32%)
dhx57NP_001163976.1 UBA_DHX57 185..222 CDD:270502
RWD_DHX57 246..424 CDD:467661 34/181 (19%)
zf-CCCH_4 308..329 CDD:465626 2/20 (10%)
HrpA 557..>1109 CDD:441249 178/555 (32%)
Blue background indicates that the domain is not in the aligned region.

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