DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pea and dqx1

DIOPT Version :9

Sequence 1:NP_610928.1 Gene:pea / 36561 FlyBaseID:FBgn0086895 Length:1242 Species:Drosophila melanogaster
Sequence 2:XP_021332040.1 Gene:dqx1 / 100002601 ZFINID:ZDB-GENE-150224-1 Length:571 Species:Danio rerio


Alignment Length:646 Identity:166/646 - (25%)
Similarity:276/646 - (42%) Gaps:173/646 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   578 TLVEQRQSLPIYKLRDDLIKAVTDNQILIVIGETGSGKTTQITQYLGECGFT---ARGKIGCTQP 639
            :|:|||:.||::.|:..|::.:..:.::|:..:.|:||:||:.|:..|...:   ::|.:..|||
Zfish    67 SLLEQRKQLPVWSLKLSLLEHMEKHSMIILSSDGGTGKSTQVPQWCVEYAQSHEFSQGVVCVTQP 131

  Fly   640 RRVAAMSVAKRVAEEYGCRLGQEVGYTIRFEDCTSPETIIKYMTDGMLLRECLMEAELKSYSVIM 704
            ...||.|:|.|.|:|....||.||||.:..||..:|:||::::||.:||:|.:.:..|:.|.|::
Zfish   132 YSAAACSLALRAADEMDLSLGLEVGYRVPHEDGCTPDTILRFVTDALLLQEMMSDPLLRQYGVLV 196

  Fly   705 LDEAHERTIHTDVLFGLLKTAVQKRPELKLIVTSATLDAVKFSQYFFKAPIFTIPGRTFP----- 764
            :|||.|||:.||||.|||:...::|.:|:::|.:|...|..||.:..:    |:|....|     
Zfish   197 IDEAQERTVATDVLLGLLRDVCRQRADLRVLVLTAPAAATSFSSFLGE----TVPHLQLPCAPQT 257

  Fly   765 -VEVLYTKEPET--DYLDASLITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPDVP 826
             .|||| :||..  |.|.|::.|::.:|.|..|||:|:||.|.:||......|.:...||...:.
Zfish   258 HTEVLY-REPAAGRDLLTAAVHTILDLHRRGEPGDMLVFLPGPQEISECASALEKECVSLSAQLS 321

  Fly   827 ELIILPVYSALPSEMQTRIFD----------PAPAGSRKVVIATNIAETSLTIDGIFYVVDPGFV 881
            .|.::.|::..... ..:::|          ||....|:||:....||.|.:|:.:.||:|.|  
Zfish   322 CLRVVCVHAGAGGS-SAQLYDTEAPDGGELEPAEDPRRRVVLTDACAEASFSINNVRYVIDCG-- 383

  Fly   882 KQKVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKTYRLYTERAYRDEMLPTPVPEIQRTNL 946
                                                                             
Zfish   384 ----------------------------------------------------------------- 383

  Fly   947 ATTVLQLKTMGINDLLHFDFMDAPPVESLVMALEQLHSLSALDDEGLLTRLGRRMAEFPLEPNLS 1011
                :|:||:.:...:....:.|||                                        
Zfish   384 ----VQIKTVCVCVCVCVCAVSAPP---------------------------------------- 404

  Fly  1012 KMLIMSVALQCSDEILTIVSMLSVQNVFYRPKDKQALADQKKAKFNQAEGDHLTLLAVYNSWKNN 1076
                      |   .:|            .|.||...|...:......:|||:||:.:||::..:
Zfish   405 ----------C---FVT------------PPADKVEAAATHRRTMLHPDGDHMTLINIYNAYLQH 444

  Fly  1077 KFSNAWCYENFVQIRTLKRSQDVRKQLLGIMDRHKLDV----VSAGKNSVRIQKAICSGFFRNAA 1137
            ....|||..||:....|:.:..:|.:||.:|.|.:|.|    .....||..|::|:.||||...|
Zfish   445 NEDEAWCRTNFLSSSALRLAVVIRAELLEVMQRIELPVSPPAFGCQDNSTNIKRALISGFFLKVA 509

  Fly  1138 KK-DPQEGYRTLVDSQVVYIHPSSALFNRQPE-----WVIYHELVQTTKEYMREVTTIDPK 1192
            .. |....|..|....|..:||.|:...|:|:     ||:||:...:....:..|:.|.|:
Zfish   510 HDVDGSGNYLLLTHRHVSQLHPFSSYRCRRPQLSPPSWVLYHDFTVSHDNCICIVSEIHPQ 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
peaNP_610928.1 S1_DHX8_helicase 285..363 CDD:240189
HrpA 573..1221 CDD:224557 166/646 (26%)
dqx1XP_021332040.1 HA2 47..>385 CDD:331981 109/394 (28%)
OB_NTP_bind 469..570 CDD:311586 30/100 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D354219at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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