DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rcd1 and Kansl3

DIOPT Version :9

Sequence 1:NP_001260963.1 Gene:Rcd1 / 36560 FlyBaseID:FBgn0033897 Length:1131 Species:Drosophila melanogaster
Sequence 2:XP_006244870.1 Gene:Kansl3 / 316328 RGDID:1309220 Length:903 Species:Rattus norvegicus


Alignment Length:1001 Identity:269/1001 - (26%)
Similarity:426/1001 - (42%) Gaps:256/1001 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 MEHSYMRDTPVRSDVHNGLTPARNILVRHPPQCPSCHTYPPQHEE----------LSEIQQAHVP 187
            ::|||.:......|. :...|.|.:.|.           |.:.:|          :..:.....|
  Rat    37 LDHSYAKPWSAHPDA-SSARPTRMLFVT-----------PRRQQENTIESDVPIDVETVTATPAP 89

  Fly   188 PYDEVVAKEAMNECARIAKYVKNNNS---DEQDWVARVNKFNWTPMQEMVFEKVCSILDQDQLAR 249
            .||...|:..||||.|...:.:.:..   ..:||...||:..||..|..:|.|:...|..|:|||
  Rat    90 LYDNQKARSVMNECERHVIFARTDADAPPPPEDWEEHVNRTGWTVAQNKLFNKILKALQSDRLAR 154

  Fly   250 LANDKRQHEPIHRRISSDKSASRFRKLLASVAWESRITQWIHALLMEHLSPSYMASYLEILQTLK 314
            |||:...:||:.||::.||.|.|.|:.||||:|::::.||:|..|:|.||...:|:||:.|||||
  Rat   155 LANEGACNEPVLRRVAVDKCARRVRQALASVSWDTKLIQWLHTTLVETLSLPMLAAYLDALQTLK 219

  Fly   315 TKLPTLVDKMLFGRPLNNSQ------ELLAPVMKKRWEPNI----MPKSRQLTHNAIMVVLPNMP 369
            .|:|||:|:||..   :|::      |.|:.::|:.|:|.:    ..|..:|..:.::::..:.|
  Rat   220 GKIPTLIDRMLVS---SNTKTGAAGAEALSLLLKRPWDPAVGVLSHNKPSKLPGSPLILIASSGP 281

  Fly   370 TTGT--VSDRMQKWYQALSTITQVVQISLPNTNNRIG---NQNLDHVAETIVSITRVKINELRTE 429
            ::..  .|.|.:.|...||.:.:|:.::....||..|   .|.|:|:...:    |.|:.|:.:.
  Rat   282 SSSVFPASRRHRFWQSQLSCLGKVIPVATHLLNNGSGVGVLQCLEHMTGAV----RSKVLEIHSH 342

  Fly   430 NPSRGIILVGFNAGAALALQVALSESVACVVCMGFAYNTIRGPRGTPDDRMLDIKAPILFVIGQN 494
            .|.:.|||:|::.||.:|..|::.|.|..|||:||...|:.||||..||.:||:|.|:|||||||
  Rat   343 FPHKPIILIGWSTGALVACHVSVMEYVTAVVCLGFPLLTVDGPRGDVDDPLLDMKTPVLFVIGQN 407

  Fly   495 SARTSQEEMEGLRERMQSESSLVVVGSADDALRVPKSKRRIEGVTQSMVDYMVVEEIFEFVNRTL 559
            |.:...|.||..||::::|:||||||.|||.||:.|:|::.||:||||||..:.:||.:|:...|
  Rat   408 SLQCHPEAMEDFREKIRAENSLVVVGGADDNLRISKAKKKSEGLTQSMVDRCIQDEIVDFLTGVL 472

  Fly   560 --------------------------------------SNP--PGPRMPTCLMHQQGYQRL---- 580
                                                  |.|  |..|:||   ...|.:.|    
  Rat   473 TRAEGHVGSEPRDQDAEKKKKPRDVARRDLAFEIPERGSRPASPAARLPT---SPSGSEDLSSVS 534

  Fly   581 --PKQSPHILAD--GNANKAVQ----QMRKR---KMDGGLDDSMGQPSKTKFVPHNR-VHKPKPP 633
              |..||.....  .:|.|:.|    |:.:|   :.|..|.....|.....|:..|. |.|..||
  Rat   535 SSPTSSPKTKGTTVTSAQKSSQIGTSQLLRRHVQRTDAVLTHRQAQAQFAAFLKQNMLVRKAFPP 599

  Fly   634 R----LIDPFAVKRKVGRPRTRPLPNVGGSARSVSQKGAPHPDQPKLSGEEPNQ----SIEFILD 690
            .    |..|.:         :.|:..|......|..| ..||..| |.|.:|::    .:..|  
  Rat   600 GTSSCLFVPIS---------SEPVEEVEKEELRVQLK-RHHPSSP-LPGAKPSKRPKIKVSLI-- 651

  Fly   691 DAQDYGDAQTTAGGSASLPKVITPGVLGKQLPPVNLAAGTKIKMIPSSQFVQIKSLPSQSKLINY 755
               ..||   |.||..:|.:..||...|.:  |:.:..|.      |:...::..|.:.:|    
  Rat   652 ---SQGD---TVGGPCTLSQGGTPEAAGGK--PITMTLGA------SAGAKELTGLLTTAK---- 698

  Fly   756 TLNKPSVGTSSTANIGSVVKTLPCSSVSGQQIITLKTPSG-QTQQFATAATSTGAA--GSSTSTG 817
                     ||::..|......|..:.|.      .||:. .|.|....|||.|::  |:::::.
  Rat   699 ---------SSSSEGGVTASAAPSVASSN------ATPNAIHTLQSRLVATSPGSSLPGAASASS 748

  Fly   818 TGQKKYTVFKNANGMTMLHLTKSVPTTGSSSGSANMDLSNIIDMPIVFADNEGNIPEHQQADKDI 882
            ..|          |::......|..|||                 :..:.:.|..|   ||....
  Rat   749 LLQ----------GLSFSLQDISSKTTG-----------------LPGSPSPGPAP---QATSVK 783

  Fly   883 KPAPIRSANKSPLIISQKIIKEANKPSGMVTSGSITAV-------------SKPG-------NIV 927
            .|.|::|.                   |.:|:|:.|.|             :.||       .::
  Rat   784 LPTPMQSL-------------------GAITTGTSTIVRTIPVATTLSSLAATPGGKPTAIHQLL 829

  Fly   928 LNKGLQQLLNSSPGGTLATQNKVVYLNRSTIKPMGNVAPGTHRVPIRIVSTPNTGGAVTTTASSS 992
            .|.||.:|.:|.||                :..:.|.|.|. :||..|..|  ..|..:...:.|
  Rat   830 TNGGLAKLASSLPG----------------LAQISNQASGL-KVPTTITLT--LRGQPSRITTLS 875

  Fly   993 PIMVDPATGSKVAKTVNVQTIKPTGS 1018
            |:    .:|:..::..|.|.: |:.|
  Rat   876 PM----GSGAAASEEPNSQML-PSSS 896



Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341564
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3571
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006481
OrthoInspector 1 1.000 - - oto95780
orthoMCL 1 0.900 - - OOG6_105996
Panther 1 1.100 - - LDO PTHR13136
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5454
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.740

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