DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mam and maml3

DIOPT Version :9

Sequence 1:NP_001286401.1 Gene:mam / 36555 FlyBaseID:FBgn0002643 Length:1594 Species:Drosophila melanogaster
Sequence 2:XP_004911180.2 Gene:maml3 / 100158633 XenbaseID:XB-GENE-5871020 Length:1089 Species:Xenopus tropicalis


Alignment Length:1580 Identity:327/1580 - (20%)
Similarity:448/1580 - (28%) Gaps:671/1580 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 NANLGATGGIAGITGGNGAGGPTNPGAVPTAPGDTMPTKRMPVVDRLRRRMENYRRRQTDCVPRY 153
            :.|..:.||:...:..|.......|.|.......::| |...||:|||:|:|..||....|..||
 Frog    23 SGNAPSIGGVGSHSSNNPPPSTIGPNAANNGSSVSIP-KHSTVVERLRQRIEGCRRHHVSCESRY 86

  Fly   154 EQAFNTVCEQQNQETTVLQKRFLESKNKRAAKKTDKKLPDPS--------------QQHQQQQHQ 204
            :||.....:.:.::|..|.:|.||.:    |||:.......|              .:|..||||
 Frog    87 QQAQAEQLDMERRDTVNLYQRSLEQR----AKKSSSSQGGASAGAAAGSASGGAGGNKHHHQQHQ 147

  Fly   205 QQQQHQQHQQHQQAQTMLAG-------------QLQSSVHVQQKFLKRPAEDVDNGPDSFEPPHK 256
            ||||.:|.||.|.|:|  ||             .||.:||                       .|
 Frog   148 QQQQVKQQQQQQDAET--AGSSGTAEQRNHTLIMLQEAVH-----------------------RK 187

  Fly   257 LPNNNNNSNSNNNNGNANANNGGNGSNTGNNTNNN--GNSTNNNGGSNNNGSENLTKFSVEIVQQ 319
            |....:..|....||..:    |..|.:.......  |..|.||       ..|:...||..:.|
 Frog   188 LEGARSPQNGEQQNGVCD----GRFSPSAKRRRKELPGMDTLNN-------LSNMPLPSVSPLHQ 241

  Fly   320 LEFTTSAANSQPQQISTNVTVKALTNTSVKSEPGVGGGGGGGGGGGSGNNNNNGGGGGGGNGNNN 384
            |:......||                              |...||..:.:.|||          
 Frog   242 LDIKPHIQNS------------------------------GIHSGGLEDVSKNGG---------- 266

  Fly   385 NNGGDHHQQQHQQQQQQQGGGLGGLGNNGRGGGPGGMATGPGGVAGGLGGMGMPPNMMSAQQKSA 449
                         ||..:      |..||                             |:..:.:
 Frog   267 -------------QQDIK------LAVNG-----------------------------SSDLEES 283

  Fly   450 LGNLANLVECKREP-------DHDFPDLGSLDKDGGGGQFPGFPDLLGDDNSENNDTFKDLINNL 507
            |..|.| .|.|.||       |.....|.:.:|             |..|.:.|:..:::||:.|
 Frog   284 LNILQN-KEIKHEPLDDASVIDTSETSLSNQNK-------------LFSDINLNDQEWQELIDEL 334

  Fly   508 ------QDFNPSFLDGFDEKPLLDIKTEDGIKVEPPNAQDLI--NSLNVKSEGGLGHG-FGGFGL 563
                  .|....|.:.|:||..||...        |:||..:  .|.:|||:.  .|. |....:
 Frog   335 ANTVPEDDIQDLFNEDFEEKKELDFPR--------PSAQTPLPHESASVKSDP--SHSPFPSVSI 389

  Fly   564 GLDN-------------------------PGMKMRGGNPGN----------QGGFPNGPN--GGT 591
            |...                         |...|..|:|.:          |...|..|:  .|.
 Frog   390 GSPQVRPSSSGPSFSNVSSVSSIPSVSSAPSTLMLAGSPASCVVQSPQTPTQPHTPGQPSTRPGN 454

  Fly   592 GGAPNAGGNGGN-SGNLMSEHPLAAQTLKQMAEQHQHKNAMGGMGGFPRPPHGMNPQQQQQQQQQ 655
            |.|.|...|.|: |.||.|.....|:.|||||.|                      |||:.:..|
 Frog   455 GYAMNPSSNSGSGSVNLPSADLSPAEQLKQMAAQ----------------------QQQRAKLIQ 497

  Fly   656 QQQQQAQQQHGQMMGQGQPGRYNDYGGGFPNDFGLGPNGPQQQQQAQQQQ-----PQQQHLP--- 712
            |:|||...|.......|.|.  :.|||.:..:   .|..|....|....|     |...:.|   
 Frog   498 QKQQQHTTQPSSWSPVGPPS--SPYGGAYGTE---KPTSPMMYPQVFNNQTPIVSPMANNPPKTT 557

  Fly   713 -----PQFHQQKGPGPGAGMNVQQNFLDIKQELFYSSQNDF-DLKRLQQQQAMQQQQQQQHHQQQ 771
                 ||.|....       |.|.|.|........|:...: :.|.|....|           :.
 Frog   558 MNNYLPQSHMNMA-------NQQTNNLGTNSISKPSNMLSYGNTKPLSHFSA-----------EM 604

  Fly   772 QQQQQPKMGGVPNFNKQ------QQQQQVPQQ--QLQQQQQQ----QQQQQQQQQQQYSPFS--N 822
            .|:..|.:.   |.||.      |||..:|||  .|.::|::    :|:....|...|.|.|  .
 Frog   605 SQRMTPPLA---NQNKNSLIPYIQQQPPMPQQMSHLSEEQKRLLIMKQKGLMNQSMGYPPLSAHG 666

  Fly   823 QNPNAAANFLNCPPRGGPNGNQQPGNLAQQQQQPGAGPQQQQQRGNAANGQQNNPNAGPGGN--T 885
            |..||.             |..:|           :||.||.             .|.|||.  .
 Frog   667 QEQNAI-------------GMSRP-----------SGPMQQS-------------GATPGGPGFM 694

  Fly   886 PNAPQQQQQQSTTTTLQMKQTQQLHISQQGGGAHGIQVSAGQHLHLSGDMKSNVSVAAQQGVFFS 950
            ||.||....:      ||...|:..:.:|                                   .
 Frog   695 PNQPQAAMMK------QMFIEQRAQLMEQ-----------------------------------Q 718

  Fly   951 QQQAQQQQQQQQPGGTNGPNPQQQQQQPHGGNAGGGVGVGVGVGVGNGGPNPGQQQQQPNQNMSN 1015
            :||..::|:|||...     .|||.||||                                    
 Frog   719 KQQLLREQRQQQILA-----EQQQMQQPH------------------------------------ 742

  Fly  1016 ANVPSDGFSLSQSQSMNFNQQQQQQAAAQQQQVQPNMRQRQTQAQAAAAAAAAAAQAQAAANASG 1080
                             .|:|..||   ||||..|...|:..|.|...|...||.|....:.   
 Frog   743 -----------------LNRQHLQQ---QQQQRNPYTVQQVNQFQGDMARNQAALQNMRTSR--- 784

  Fly  1081 PNVPLMQQPQVGVGVGVGVGVGVGVGNGGVVGGPGSGGPNNGAMNQMGGPMGGMPGMQMGGPMNP 1145
                                  :.|.|.|::                              ||.|
 Frog   785 ----------------------IIVQNAGMM------------------------------PMGP 797

  Fly  1146 MQMNPNAAGPTAQQMMMGSGAGGPGQVPGPGQGPNPNQAKFLQQQQMMRAQAMQQQQQHMSGARP 1210
            .| ||.|.|.::.|..||.         .|....:.||.......     ..:.|..||      
 Frog   798 SQ-NPGAVGASSLQPEMGM---------APYSNTSTNQPAMYNMN-----TGVNQMMQH------ 841

  Fly  1211 PPPEYNATKAQLMQAQMMQQTVGGGGVG-VGGVGVGVGVGGVGGANGGRFPNSAAQAAAMRRMTQ 1274
              |..|:........|..:|...|..:| |||.|..:.|                          
 Frog   842 --PNQNSINMGHSSIQGPRQPSSGQPLGLVGGFGQNILV-------------------------- 878

  Fly  1275 QPIPPSGPMMRPQHAMYMQQHGGAGGGPRTGMGVPYGGGAGGPMGGPQQQQRPPNVQVTPDGMPM 1339
                  .|:|..||    ||                   ..||:|.|..:.:.|.:|.....:|.
 Frog   879 ------NPVMSQQH----QQ-------------------MKGPVGQPINRTQTPRLQNMMTSLPQ 914

  Fly  1340 GSQQEWRHMMMTQQQTQMGFGGPG--PGGPMRQGPGGFNGGNFMPNGAPNGAAGSGPNAGGMMSG 1402
            |: |.|         .|.|..|..  ..|.:    |.:|.|:..|                |.||
 Frog   915 GA-QGW---------AQRGLQGMSVRTSGDI----GAYNNGSIYP----------------MQSG 949

  Fly  1403 -PNVPQMQ------------------LTPAQMQQQLMRQQQQQQQQQQQHMGPGAANNMQMQQLL 1448
             |.:|:..                  |.||..:|.:.....||...|.:.:.||      |..::
 Frog   950 QPRMPKQHFQQGHTQSVIDSSGTVRALNPAMGRQMIQSLPGQQLNNQPRQIMPG------MNSVV 1008

  Fly  1449 QQQQSGGGGNMMASQMQMTSMHMTQTQQ-QITMQQQQQFVQSTTTTTHQQQQMMQMGPGGGGGGG 1512
            ....|   .|...|| ||.....:|..| |:..:...|.:..:.|..              |.|.
 Frog  1009 PSMPS---FNPSPSQ-QMPGGSFSQNNQGQVYDRNPSQDIAYSYTDV--------------GAGS 1055

  Fly  1513 GPGSANN--------NNGGG 1524
            .||.|:.        |.|.|
 Frog  1056 FPGIADGVDLVDSIMNRGPG 1075

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mamNP_001286401.1 MamL-1 127..183 CDD:286652 20/55 (36%)
maml3XP_004911180.2 MamL-1 59..115 CDD:401509 22/60 (37%)
YukC <275..358 CDD:413101 24/125 (19%)
Med15 677..>1034 CDD:312941 124/655 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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