DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ctf4 and ctf-4

DIOPT Version :9

Sequence 1:NP_610921.1 Gene:Ctf4 / 36551 FlyBaseID:FBgn0033890 Length:895 Species:Drosophila melanogaster
Sequence 2:NP_505799.1 Gene:ctf-4 / 179521 WormBaseID:WBGene00008921 Length:1101 Species:Caenorhabditis elegans


Alignment Length:1032 Identity:200/1032 - (19%)
Similarity:370/1032 - (35%) Gaps:267/1032 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 MCIAHTGTRLLASTDRNTIHAYTFPEMDSDGIL--MRFTAPATCLKVSGGYTAAGSEDTTIKVLK 120
            :|..:.....:..:::..:........::..|:  :.|....|.:..:......||.|..:|...
 Worm    72 ICFGYRKVDFIVGSEQQMVGRAKKGNFEAGDIIDPLEFQMDVTTVDANRENVIGGSSDYAVKCTN 136

  Fly   121 GDTAGNETVLEGHTGPILALDLFAERKLLVSVAGDGQLKVWNFEEGKELKTIGGL-PKVNSFE-- 182
            ......|.........:|.:.|..:.:.:.....||.:.:.:.:......|:..: |:..:.:  
 Worm   137 MKDLDAELKTRSLEAEVLCVKLDPKNEFVAVSTVDGNVTIIDIDSFSIKHTLTKVFPRFETIDVS 201

  Fly   183 ------SASLYGTPHFEPQSGELLAYAVDNEIVVLNTANWEVA--FKLRDDSVSSNYSCCQFSPN 239
                  |.|..|...|.|..|.:.:|         ....||.:  ::|:|.: |.::|....||.
 Worm   202 RPRIQLSWSKDGQWLFVPSKGCVKSY---------RRNGWEESGVYRLKDHA-SVDFSVTALSPC 256

  Fly   240 GERLAAGTTKGEVSIFDVKKRKAVTVEIPPSDCNAITCLAWNLSGEVEVAFCD--ATGQLGTVFL 302
            |:.||:.|...::::                         || |.|:::..|:  .....|...:
 Worm   257 GKYLASSTMDNQIAV-------------------------WN-SDELDIVCCEKFVRNAPGITII 295

  Fly   303 GDAV------------DTGNGDGLVDDQAELLGDDYEFE-----AGDDVDTAADDGDGVSLEQ-- 348
            ...|            |:..|..|.:    :..||...|     ..:||...:||.|.:.|.:  
 Worm   296 TSIVFSPFSPKKLIVADSNRGICLFN----VFKDDSSNEKPVSNKTEDVAVDSDDDDSILLNRTS 356

  Fly   349 LKRKVMNFADPVDHDDASNQSLD----------------------------------SSSRTVPA 379
            ||:..:...:.::.|:.:..|.|                                  ||.|.:..
 Worm   357 LKKDSLFNEEAIEEDEDTRMSSDLGAIKRQFNYGNQDLGGLEEFGFKLGEPEEMRPMSSDRNLND 421

  Fly   380 PV--------APQIKLFKQQTAFQPSATPADLE--HRYMAWNDVGIVTAHV-EPSGDSSIDVEFH 433
            |:        ||:..|..::  |..:::|.||:  .|::.:|..||:.::| |.:..|:||:|||
 Worm   422 PLPQVYSDPPAPRKVLIPER--FVSNSSPMDLDATQRFLKYNRFGIIRSYVNEANKVSTIDIEFH 484

  Fly   434 DASIHHALHISNYN-QHNLASVSSGALALASNESSK----------------------------- 468
            :.|||..:||.|:. .:.||.:|...:||||.||.|                             
 Worm   485 NKSIHGDIHIDNFEINYELADISLKVVALASVESRKKEKELDKANDDIEDLETDEPAKTEKKGTS 549

  Fly   469 -LVVIALAAAGNKEWSLSLPDCESAEAVVATRFLVAVATSSSFLRIFTVMGTQREVLTIPGPMVA 532
             |.||.:.|..::.||:.||..:....|:.:...|.|.|....:|:||:.|.||::.|...|::.
 Worm   550 LLHVIPIQAFDSQRWSMVLPRGDGCIDVLCSNTQVVVLTKKRNIRVFTIGGIQRQIFTHFAPILT 614

  Fly   533 IAGHEHSLMVV-------YHSSAPSQTQQHLAAMLVN---------INGLSLRQEYLPVPLTPGR 581
            .|..|..|.:.       |......|.:..:....:|         .:|.:.....:.||:..|.
 Worm   615 AACFEDRLAIASVCGSEFYEQKKTPQWRFEVVEYTLNPKSWYRENRHHGSTGAVSRIDVPIETGE 679

  Fly   582 QLTWFGYSDTGSPSIADNMGLLQLYRRSSNAWFPICDTMKQSTSVSHNFFVVAVSEKRQIVQAVL 646
            ||.|..||:.|..::.|:...:.:. .:...|.||........:.|...|.:.::.|.  .:.:.
 Worm   680 QLDWIAYSNQGKLAVMDSAYTVHVL-SAPGLWIPIFQGSSALRAPSDAIFPIGLTVKE--FRYIY 741

  Fly   647 CRGTSYPMTNPRPMLQELRMQIPLCDVEVEKSELEDAL------LRSSLMQMDGAEKMQK----- 700
            |||:..|:.|.......:..::|.|..|..::|:|..:      |..::::.:|...:::     
 Worm   742 CRGSRSPLVNGINAPTTVEFKVPFCQPESHRTEMEHEMFLKELSLADAILERNGDSHVEEAKTLT 806

  Fly   701 ETAIKLFALACSSECETRARELIESI-----ACTDLLQLAVKYATKRGRIHLS------------ 748
            :|.:||||....:..:.:|.|:...:     |....:|....||:|..::.|:            
 Worm   807 KTIVKLFAWLTKTNSDGQAAEVAALVSGGTSASAKAIQSLCNYASKCKKVALAEKVAEIGRRLTE 871

  Fly   749 ---DRLC---ELLPQLEAVQEARKQQTLLGASGIAATIVLPMTPTSASQSGPKPKA-------IE 800
               ||.|   |:.|.......|||.|.       |.:..:.......:..|.:..:       :.
 Worm   872 DDDDRSCNDTEIWPTKRIALAARKAQK-------APSPTVESLNEDQTNDGDESSSRYNLNMDVS 929

  Fly   801 LSSAKRGTLKRLVNSP-------NMFKAAAASAAS----------------RPSTPDITPSPLDT 842
            :.|.....|:||..:|       :...:||:|.||                |...|:...|...|
 Worm   930 MMSQPVQPLERLAKNPFAKGSDTSKIDSAASSQASLSIFDQLESTSNDQRKRAREPETVTSTNQT 994

  Fly   843 -----QENIFGESESEVPMGKATDHRSPL--------------------NSVNPFAM 874
                 :.|..|..:|:....|.:...|.|                    .||:|:.|
 Worm   995 VRKQAKLNFGGTQQSDEKKKKTSSKNSDLGQKGKENEAETLCPIEEPAKKSVSPYEM 1051

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ctf4NP_610921.1 WD40 1..>304 CDD:225201 40/260 (15%)
WD40 12..256 CDD:295369 34/210 (16%)
WD40 repeat 16..52 CDD:293791
WD40 repeat 97..131 CDD:293791 6/33 (18%)
WD40 repeat 138..173 CDD:293791 5/34 (15%)
WD40 repeat 181..223 CDD:293791 9/51 (18%)
WD40 repeat 231..268 CDD:293791 7/36 (19%)
Mcl1_mid 393..670 CDD:289138 80/326 (25%)
ctf-4NP_505799.1 WD40 <112..282 CDD:392136 35/205 (17%)
WD40 repeat 113..148 CDD:293791 6/34 (18%)
WD40 repeat 154..189 CDD:293791 5/34 (15%)
WD40 repeat 198..239 CDD:293791 9/49 (18%)
WD40 240..>330 CDD:392136 22/120 (18%)
WD40 repeat 247..288 CDD:293791 12/66 (18%)
WD40 repeat 295..320 CDD:293791 3/24 (13%)
Mcl1_mid 442..764 CDD:372058 80/324 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165958
Domainoid 1 1.000 97 1.000 Domainoid score I4551
eggNOG 1 0.900 - - E1_KOG1274
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 126 1.000 Inparanoid score I3263
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG55477
OrthoDB 1 1.010 - - D155530at2759
OrthoFinder 1 1.000 - - FOG0005096
OrthoInspector 1 1.000 - - oto17872
orthoMCL 1 0.900 - - OOG6_102719
Panther 1 1.100 - - LDO PTHR19932
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R690
SonicParanoid 1 1.000 - - X4720
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.800

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