DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6701 and Helz

DIOPT Version :9

Sequence 1:NP_001188923.1 Gene:CG6701 / 36550 FlyBaseID:FBgn0033889 Length:1333 Species:Drosophila melanogaster
Sequence 2:XP_008766536.1 Gene:Helz / 287773 RGDID:1307049 Length:1981 Species:Rattus norvegicus


Alignment Length:1441 Identity:308/1441 - (21%)
Similarity:523/1441 - (36%) Gaps:404/1441 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 PNSSEIRQKLSSQG--------ATNIGSLLHRTNFLI-NTPRGNPNYRIKNFSLMDFRKEKFNLL 150
            |.||.:.|.||.:.        .|.:.:||..|.... |.|.|        ..:.|..:...|..
  Rat   110 PVSSILAQSLSGESLNGMVTKDLTRLKTLLAETETATSNAPSG--------CHVEDLDEGSCNGW 166

  Fly   151 DEQHRLRGIASTTDVPGGAPAEGNKPIIEEYKL-----------------DTDVKPTLLKFQKRL 198
            ..:...|||.|:                |||.|                 ....:..|.::|||.
  Rat   167 HFRPPPRGITSS----------------EEYTLCKRFLEQGICRYGAQCTSAHSQEELAEWQKRY 215

  Fly   199 ------LLQSDKDFELQSLGCY----------------ICQENFEKIEKYEEHVEYHGDESDFQS 241
                  |.|..::.:|.  |.|                :..|..|.::     ||:..|.|...:
  Rat   216 ASRLIKLKQQSENKQLS--GSYMETLIEKWMSSLSPEKVLSECLEGVQ-----VEHSPDLSVTVN 273

  Fly   242 LKKMKKYPTPIVSLSYQTCVDSHYFGFTLKTFRKDLVVDKFIIVQLRQFYYVYGAQMP------- 299
            .||           |:||..    |..|.|..|           .|.:...:|.|..|       
  Rat   274 TKK-----------SHQTWT----FALTCKPAR-----------MLCRVALLYDAHRPHFSIIAI 312

  Fly   300 ------------------------LPVNGSGELVFFV----DSHVFMILREQPIVIGFTIQGEKY 336
                                    :..||....|:.|    ::.:|...| |.||..|.::..  
  Rat   313 SAGDSTAQVSQEVPENCQEWIGGEMAQNGLDHYVYKVGIAFNTEIFGTFR-QTIVFDFGLEPV-- 374

  Fly   337 VEQHHFMRTEALPKASFNINPYRLSSKETFKSKGLPPANPPIQVLSALKHEDAQMCLASFDNQYQ 401
                 .|:...:..||.....|.:.:|:..             |.:|.:.|.:...:..|:....
  Rat   375 -----LMQRVMIDAASTEDLEYLMHAKQQL-------------VTTARRWEPSSKTIVDFEPNET 421

  Fly   402 NYCERG---------------------REITQENLTGTLRTLLQVEDIERLQHYLSLKQSE---- 441
            ...|:.                     :.:|:.|....|..||.:|:|.:.:....|...|    
  Rat   422 TDWEKSLLIRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSRLNGIEPVKV 486

  Fly   442 -MELHQFGRELSVKMQMGTTSMSVEDILSPGDDVLIINEKGNPKSAVRKMLENNNNVLE------ 499
             :.:|.....|.|::|:..:.|             :....|..|.|....|.....:.|      
  Rat   487 PICVHCAKFNLKVQLQILASFM-------------LTGVSGGAKYAQNGQLFGRFKLTETLSEDT 538

  Fly   500 ----LALKDFDSILRWARNVDGMVGSLDKQPRVYFARILGVSTQ----RVNITCERQL---PD-N 552
                |.:...:::.......:.:|.|...:.:||.|.|...:..    |::..|..:|   || :
  Rat   539 LAGRLVMTRVNAVYLLPVPKEKLVQSQGTKEKVYEATIEEKTKDYVFLRISRECCEELSLRPDCD 603

  Fly   553 TTYTLIFRPLRAVMRYQYRALQQLSFTRHSDVQRILFPG-----EIPNTPLASGVLQLNNKLIST 612
            |...|.|:..|..:...:.||.::.      ...:|||.     .||.:|......||:.:|   
  Rat   604 TQVELQFQLNRLPLCEMHYALDRIK------DNGVLFPDISMTPTIPWSPNRQWDEQLDPRL--- 659

  Fly   613 NPEQMQAVRQIALSPRL---KAPYIVFGPPGTGKTSTIVEAIYQLYINRPETHILVLAGSNTACD 674
            |.:|.:||  :|::..|   ..|.::.||.|||||.|:.:|:..:...:..:.||:...||:|.|
  Rat   660 NAKQKEAV--LAITTPLCIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETSRILICTHSNSAAD 722

  Fly   675 EVALRLLRAIAKAPQSQPRPLTRIFSANCDRRIDNIDDLLLEY---SNMYTVHFYPAVQAVHQYR 736
            ......|....:|..:|.||| |::..|  |.:..:..::.:|   |:.::....|..:.:.::|
  Rat   723 LYIKDYLHPYVEAGNAQARPL-RVYFRN--RWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHR 784

  Fly   737 IVICTLSLAGKLS----TGGFAANNVYTHVFVDEAAASTEAEVLMGITCTLSPTLNLILSGDHKQ 797
            :|:.||:.:..|.    ..||     :||:.:||||.:.|.|.:|.:......| .::|:|||.|
  Rat   785 VVVVTLNTSQYLCQLDLEPGF-----FTHILLDEAAQAMECETIMPLALATKNT-RIVLAGDHMQ 843

  Fly   798 LGPVLQSQRANEWGLGLTLFERLLQRKCYQVEEDGSYNASVQTRLI--RNFRSHPEIVSLYNNMY 860
            |.|.:.|:.|.|..|.::|.:||.:.          |.|....|::  .|:|||..|::..:.::
  Rat   844 LSPFVYSEFARERNLHVSLLDRLYEH----------YPAEFPCRILLCENYRSHEAIINYTSELF 898

  Fly   861 YEGHLRTEAPMEIVCRFHNWFYLPNATFPIMFHSVFGTTMNTKSSVSLCNNKEIDVVMDYVKDL- 924
            |||.|........    |..||      |:.|.:..|..:..|:|.:..||.|:..|::.|::| 
  Rat   899 YEGKLMASGKQPA----HKDFY------PLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELR 953

  Fly   925 ----MYFGLNGEKLLQTDIGIISPYKNQYQRIQEQLNMRNWSQIDCGSVELFQGKEKHVIIVSFV 985
                :.:|    ||....||:::||.:|..||:.:|..:..|.::...|...|||:..|:.:|.|
  Rat   954 RKWPVAWG----KLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTV 1014

  Fly   986 RS-------FTP---------------KLGFLNNERRLNVLLSRPISLLILIGNPRTLSQ----N 1024
            |:       .||               ..|||:|.:.||..::|..||:.::|:|..|..    .
  Rat  1015 RTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPVALCSIGRCR 1079

  Fly  1025 SDFQHIIEMCRNRKTLVGEQYLNEDFITNKKTGANNVNKGGAAGDQPASGLRQPLKRKNHAKNPV 1089
            ..::..|.:|....:|.|..:                       :|..:.|.....:|.:..||:
  Rat  1080 KFWERFIALCHENHSLHGITF-----------------------EQIKAQLEALELKKTYVLNPL 1121

  Fly  1090 QDAKIFYSKN-ELLNLGNECQRKKSELETIFDELPKVPRSVDHDLDEVRSIEAQLKDFQLETKQD 1153
              |..|..:. .|.:.||..::::|.        ||| :|:.|         .|...||    .|
  Rat  1122 --APEFIPRAFRLQHSGNSSRQQQSP--------PKV-KSLHH---------PQNDHFQ----ND 1162

  Fly  1154 A---AGTSILVTNAPVTNAAAPSVIPRAGLMKQETPALH------SSSVSRPAIRKPTVSAATPV 1209
            .   ...|:|:.|........|.:.|...|.|..:|...      :|.:..||:....|..:.|:
  Rat  1163 GIVQPNPSVLIGNPIRAYTPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVYGGNVVMSVPL 1227

  Fly  1210 AKSRSPMPEI---------PSSSKHPISMSSNPLSTNTERCVNGVLCGIEAVPP----------- 1254
                 |:|..         |....|..:|:.|....:|....:.:..|:...||           
  Rat  1228 -----PVPWTGYQGRFAVDPRIITHQAAMAYNMNLLHTHGRGSPIPYGLGHHPPVNLGQPQNQHA 1287

  Fly  1255 -----SENKTTRSSAYNHIPSGN-FRFENVRPT-PEEVRRFNGANDQRRARPFREPHGNWSNFGW 1312
                 .:|:..::...|..|..| .|....:|| |:::..  .:|.|.|: |...|...:||..:
  Rat  1288 EKDQQEQNRNGKTDTNNPGPEINKIRTPEKKPTEPKQIDL--ESNPQNRS-PESRPGVVYSNTKF 1349

  Fly  1313 SPPPRDPTPPR 1323
              |.:|...||
  Rat  1350 --PRKDNLNPR 1358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6701NP_001188923.1 TIGR00376 424..1037 CDD:273041 168/683 (25%)
AAA_19 618..687 CDD:289986 21/71 (30%)
AAA_12 812..1019 CDD:289832 62/235 (26%)
HelzXP_008766536.1 zf-CCCH 181..205 CDD:395517 2/23 (9%)
DEXXQc_HELZ 658..885 CDD:350835 70/250 (28%)
SF1_C_Upf1 886..1086 CDD:350195 55/213 (26%)
Atrophin-1 <1195..>1536 CDD:397323 35/174 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D286011at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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