DRSC/TRiP Functional Genomics Resources

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Protein Alignment PheRS-m and fars-1

DIOPT Version :9

Sequence 1:NP_477283.1 Gene:PheRS-m / 36547 FlyBaseID:FBgn0275436 Length:453 Species:Drosophila melanogaster
Sequence 2:NP_491792.1 Gene:fars-1 / 172311 WormBaseID:WBGene00001497 Length:552 Species:Caenorhabditis elegans


Alignment Length:353 Identity:81/353 - (22%)
Similarity:128/353 - (36%) Gaps:121/353 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 PQLEVSGSTYATDGWTNVTPK-----ILSYVGANKHLQTDHPLSIIRQRIVNYFYGAYRNQRGNP 93
            |::..|||      |.::..|     .|..|.::.||   |||..:|......|:...       
 Worm   250 PEMIASGS------WKDMQFKKYNFDSLGVVPSSGHL---HPLMKVRSEFRQIFFSMG------- 298

  Fly    94 LFSVYDQMNPVVTVQQNFDNLLIPADHVSRQKSDCYYIN-------------------------- 132
             ||.......|.:...|||.|..|..|.:|...|.::::                          
 Worm   299 -FSEMATNRYVESSFWNFDALFQPQQHPARDAHDTFFVSDPAISTKFPEDYLERVKTVHSKGGYG 362

  Fly   133 -------------QQHLLRAHTTA----HQVELISGGL--DNFLVVGEVYRRDEIDSTHYPVFHQ 178
                         |:::||.||||    ...:|...|.  .....:..|:|.:.:|:||...|||
 Worm   363 SAGYNYDWKIEEAQKNVLRTHTTAVSARQLYQLAQEGFRPSKLFSIDRVFRNETLDATHLAEFHQ 427

  Fly   179 ADAVRLVTKDKLFERNPGLELFEETWSGTLADPKLILPSSKFMDQTKQPCHTLEAVKLMEHEMKH 243
            .:.|       :.|:|             |:...||...::|..:                    
 Worm   428 VEGV-------IAEKN-------------LSLAHLIGIFTEFFKK-------------------- 452

  Fly   244 VLVGLTKDLFGPRIKYRWVDTYFPFTQPSWELEIYFK--DNWLEVLGCGIMRHEILQRSGVHQSI 306
              :|:|...|.|        ||.|:|:||.|:..|.:  ..|:|:...|:.|.|:|...|:...:
 Worm   453 --LGITNLRFKP--------TYNPYTEPSMEIFAYHQGLTKWVEIGNSGMFRPEMLLPMGLPADV 507

  Fly   307 GYA-FGVGLERLAMVLFDIPDIR-LFWS 332
            ..| :|:.|||..|:.:.|.:|| ||.|
 Worm   508 NVAGYGLSLERPTMIKYGINNIRDLFGS 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PheRS-mNP_477283.1 pheS_mito 29..452 CDD:129561 81/353 (23%)
PheRS_alpha_core 69..334 CDD:238277 71/313 (23%)
FDX-ACB 356..453 CDD:214893
fars-1NP_491792.1 GST_C_family <7..55 CDD:383119
PTZ00326 65..539 CDD:240361 81/353 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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