DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn13 and Adrm1

DIOPT Version :9

Sequence 1:NP_001137662.1 Gene:Rpn13 / 36545 FlyBaseID:FBgn0033886 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_113896.1 Gene:Adrm1 / 65138 RGDID:69248 Length:407 Species:Rattus norvegicus


Alignment Length:423 Identity:177/423 - (41%)
Similarity:247/423 - (58%) Gaps:51/423 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 GSSSNS-SNLVEFRAGRMNMVGKMVHPDPRKGLVYMTQSDDGLMHFCWKDRTSGKVEDDLIVFPD 72
            ||..:| ..|||||||:|::.|..|.||.||||||:.|:||.|:||||||||||.||||||:|||
  Rat    14 GSRGSSIKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPD 78

  Fly    73 DFEYKRVDQCKTGRVYVLKFKSSTRRMFFWMQEPKTDKDDEQCRRINELLNNPPSAHQRGGGGSN 137
            |.|:|||.||.:|||||||||:.::|:||||||||||:|:|.||::||.|||||.....|..||:
  Rat    79 DCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNPPMPGTLGASGSS 143

  Fly   138 ---------DGDLQYMLNNMSQQQLMQLFG--GVGQMGGLSSLLGQ-----MNSRTPSSRNTSSS 186
                     :|.||.:|.|||..|||||.|  |:|.:|||.:|.|.     :.|..|.:.::|||
  Rat   144 GHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGGLGALTGPGLASLLGSSGPPASSSSSS 208

  Fly   187 GGGGASALQTPENVSVPRTPSAPSKSGSSRSSSNVNSQVGEGAGSSVDADAPGKNSTTSTTTASK 251
            ....::|:......|..|...|||...::.::|              .:.||...:.|| |.||.
  Rat   209 SRSQSAAVTPSSTTSSARATPAPSAPAAASATS--------------PSPAPSSGNGTS-TAASP 258

  Fly   252 STGAYANPFQAYLSNLSPEHGAGRSLNIDLSTALPGADAINQIIADPEHVKTLIVHLPESEDVDD 316
            :.....:..|:.|:.::...|.|.|..:||::.|. .:.:..|:|:.:..:.|:.:||..|.: .
  Rat   259 TQPIQLSDLQSILATMNVPAGPGGSQQVDLASVLT-PEIMAPILANADVQERLLPYLPSGESL-P 321

  Fly   317 DRKQQIKDNITSPQFQQALAQFSSALQSAQLGPVIKQFELSNEAVAAAFSGNLEDFVRALEKSLP 381
            ...::|::.:|||||||||..||:||.|.||||::.||.|..|||.||..|::|.|.:|::.:  
  Rat   322 QTAEEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAEAVEAANKGDVEAFAKAMQNN-- 384

  Fly   382 PGATMGGKPSASEKKASDP-ETPTSVARDENTD 413
                          ..||| |..|...:||..|
  Rat   385 --------------AKSDPKEGDTKDKKDEEED 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn13NP_001137662.1 PH_Rpn13 18..122 CDD:270124 73/103 (71%)
RPN13_C 267..376 CDD:293158 42/108 (39%)
Adrm1NP_113896.1 PH_Rpn13 24..128 CDD:270124 73/103 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 130..150 6/19 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 196..259 19/77 (25%)
RPN13_C 274..381 CDD:293158 42/108 (39%)
Interaction with UCHL5. /evidence=ECO:0000250 362..407 17/58 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 381..407 8/39 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341926
Domainoid 1 1.000 134 1.000 Domainoid score I4893
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 286 1.000 Inparanoid score I2765
OMA 1 1.010 - - QHG59102
OrthoDB 1 1.010 - - D1479349at2759
OrthoFinder 1 1.000 - - FOG0003818
OrthoInspector 1 1.000 - - oto97584
orthoMCL 1 0.900 - - OOG6_102724
Panther 1 1.100 - - LDO PTHR12225
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2662
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.910

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