DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rpn13 and rpn1302

DIOPT Version :10

Sequence 1:NP_001137662.1 Gene:Rpn13 / 36545 FlyBaseID:FBgn0033886 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_588003.1 Gene:rpn1302 / 2539182 PomBaseID:SPCC16A11.16C Length:388 Species:Schizosaccharomyces pombe


Alignment Length:432 Identity:115/432 - (26%)
Similarity:183/432 - (42%) Gaps:69/432 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFGRQSGLGSSSNSSNLVEFRAGRMNMV--GKMVHPDPRKGLVYMTQSDDGLMHFCWKD--RTSG 61
            :|||.....|......||..:||::...  ..::..|.|||::||..:.|.|:||.||:  |.|.
pombe     4 VFGRVRNETSERGKYGLVSVKAGKLQRKPGTNILQADHRKGVIYMQMASDELLHFYWKERARVSR 68

  Fly    62 KVEDDLIVFPDDFEYKRVDQCKTGRVYVLKFKSSTRRMFFWMQEPKTDKDDEQCRRINELLNNPP 126
            :||||.|:||::.|:.::|:|.|||||.||||||::..|:||||...:||.|....||:|:.:|.
pombe    69 EVEDDYIIFPEEAEFIKIDECTTGRVYALKFKSSSQIHFYWMQEYSDEKDKETASLINQLIADPV 133

  Fly   127 ------SAHQRGGGGSNDGDLQYMLNNMSQQQLMQLFGGVGQMGGLSSLLGQMNSRTPSSRNTSS 185
                  ::|........|        :.|..||:||||...| ..|.....::.|.|..      
pombe   134 NTTRTINSHNNSSSRGTD--------DSSTSQLLQLFGAASQ-DALQDFNWEVLSPTAE------ 183

  Fly   186 SGGGGASALQTPENVSVPRTPSAPSKSGSSRSSSNVNSQVGEGAGSSVDADAPGKNSTTSTTTAS 250
                 |.|:       :||.|:....:...|:||..|..     |....|...|::...:|.:..
pombe   184 -----APAI-------LPRFPNVNESANMYRASSESNLN-----GPHATAGENGEDHEEATASPL 231

  Fly   251 KSTGAYANP-FQAYLSNLSP----EHGAGRSLNIDLSTALPGADAINQIIADPEHVKTLIVHLPE 310
            .....|.:. ....|..|.|    |.......:||..:        :::|..|.....:..|.| 
pombe   232 DENIDYTHSRTLELLEQLQPLILNETTFVEPFSIDRES--------HRVITHPRVYPKIFPHSP- 287

  Fly   311 SEDVDDDRKQQIKDNITSPQFQQALAQFSSALQSAQLGPVIKQFELSNEAVAAAFSGNLEDFVRA 375
            |:.:....:.::.:|   ..|.:.|:....|:...:...:.:...||.|.|.:|....|  |:.|
pombe   288 SDLLRISGRAELSEN---RDFFKHLSSLMEAVAKPESESLREICNLSLEQVQSASGAEL--FLHA 347

  Fly   376 L-EKSLPPGA------TMGGKPSASEKKASDPETPTSVARDE 410
            | ::.:..|.      |..|.....|:: .|.|...|..:||
pombe   348 LYDRLVNEGVIVISHITQEGSDGEVEEE-GDVEMRESNEKDE 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rpn13NP_001137662.1 PH_Rpn13 18..122 CDD:270124 48/107 (45%)
RPN13_C 267..376 CDD:465170 21/112 (19%)
rpn1302NP_588003.1 PH_Rpn13 21..129 CDD:270124 48/107 (45%)

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