DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AGO1 and AGO2

DIOPT Version :9

Sequence 1:NP_001246314.1 Gene:AGO1 / 36544 FlyBaseID:FBgn0262739 Length:984 Species:Drosophila melanogaster
Sequence 2:NP_174413.2 Gene:AGO2 / 840016 AraportID:AT1G31280 Length:1014 Species:Arabidopsis thaliana


Alignment Length:1028 Identity:310/1028 - (30%)
Similarity:479/1028 - (46%) Gaps:166/1028 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 ESQWTPSP------------TRPQ---SPSQAQTSFDTLT-----------SPPAPGSSVNPTAV 79
            :||..|.|            .|||   .||||..|:....           .|..|..|.:|:..
plant    67 QSQRGPPPGHGGRGTTQFQQPRPQVAPQPSQAPASYAGSVGGVAGRGAWGRKPQVPSDSASPSTS 131

  Fly    80 TSPSAQNVAAGGATVAGAAATAAQVASALGATTGSVTPAIATAT-----PATQPDMPVFTCPRRP 139
            |            ||.......|:|.        ::.|::..||     |..:||.......||.
plant   132 T------------TVVSEPVRVAEVM--------NLKPSVQVATSDRKEPMKRPDRGGVVAVRRV 176

  Fly   140 NLGREGRPIVLRANHFQVTM-PRGYVHHYDINIQPDKCPRKVNR-EIIETMVHAYSKI------- 195
            |         |..||::|.. |...:.|||:.|:.:...:||:| |:  .||.  .|:       
plant   177 N---------LYVNHYKVNFNPESVIRHYDVEIKGEIPTKKVSRFEL--AMVR--DKVFTDNPDE 228

  Fly   196 FGVLKPVFDGRNNLYTRDPLPIGNERLELEVTLPGEGKDRIFRVTIKWQAQVSLFNLEEALEGRT 260
            |.:....:||:.|:::...||.|:.::|...|  .|.:.|.:..|||....:.|.:|:|.:.||:
plant   229 FPLAMTAYDGQKNIFSAVELPTGSYKVEYPKT--EEMRGRSYTFTIKQVNVLKLGDLKEYMTGRS 291

  Fly   261 RQIPYDAILALDVVMRHLPSMTYTPVGRSFFS--------------SPEGYYHPLGGGREVWFGF 311
            ...|.|.:..:||||:..||.....||:|||:              :.:||.|.|          
plant   292 SFNPRDVLQGMDVVMKEHPSKCMITVGKSFFTRETEPDEDFRFGVIAAKGYRHTL---------- 346

  Fly   312 HQSVRPSQWKMMLNIDVSATAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKI 376
                :|:...:.|.:|.|..||.||..||:::....:..|:.:.|       |....:|:.|||:
plant   347 ----KPTAQGLSLCLDYSVLAFRKAMSVIEYLKLYFNWSDMRQFR-------RRDVEEELIGLKV 400

  Fly   377 EITHCGQMRRKYRVCNVTRRPAQMQSFPL--QLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQV 439
            .:.| .:.::|..:..::.:..:...|.|  |..|....:.::.:||..||...:.:..:|||.:
plant   401 TVNH-RKNKQKLTIVGLSMQNTKDIKFDLIDQEGNEPPRKTSIVEYFRIKYGRHIVHKDIPCLDL 464

  Fly   440 GQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAP-DREREINNLVK-RADFNNDSY 502
            |:..:..::|:|.|::|.||...|...|..::..:|..:...| .|:|.|:.::| |...:....
plant   465 GKNGRQNFVPMEFCDLVEGQIYPKDNLDKDSALWLKKLSLVNPQQRQRNIDKMIKARNGPSGGEI 529

  Fly   503 VQEFGLTISNSMMEVRGRVLPPP--KLQYGGRVSTGLTGQQLFPPQNKVSLASPNQGVWDMRGKQ 565
            :..|||.:..:|..|.||||..|  ||...|||    ..::..|.||       ||  |::..|.
plant   530 IGNFGLKVDTNMTPVEGRVLKAPSLKLAERGRV----VREEPNPRQN-------NQ--WNLMKKG 581

  Fly   566 FFTGVEIRIWAIACF-APQR--TVREDALRNFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEP 627
            ...|..::.||:..| |.:|  .:..|.:.|...:..::......||:.:....:..:..:.:|.
plant   582 VTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEE 646

  Fly   628 MFRYL------KITFPGLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSN 686
            :.|.:      |.......||:..:..|...|..:|.:.:|.||:.|||.......|...|..:|
plant   647 LLRSVIDEASRKHGGARPTLVLCAMSRKDDGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRAN 711

  Fly   687 LCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMD-AHPSRYA 750
            |.||:|.|:||.|..|:.:.......:.|:|:||||.||.|.|...|||.||||::: ...:|||
plant   712 LALKMNAKVGGSNVELMDTFSFFKKEDEVMFIGADVNHPAARDKMSPSIVAVVGTLNWPEANRYA 776

  Fly   751 ATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFPHVLQHELTAIREA 815
            |.|..|.||:|.||.......||:....::| |.:|::|:::|||||:.||..||..||..::  
plant   777 ARVIAQPHRKEEIQGFGDACLELVKAHVQAT-GKRPNKIVIFRDGVSDAQFDMVLNVELLDVK-- 838

  Fly   816 CIKLEPE-YRPGITFIVVQKRHHTRLFCAEKKEQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQ 879
             :..|.. |.|.||.||.||||.||.|.|...:.|.| ||:|:||.||..:.||.|:|||||||.
plant   839 -LTFEKNGYNPKITVIVAQKRHQTRFFPATNNDGSDK-GNVPSGTVVDTKVIHPYEYDFYLCSHH 901

  Fly   880 GIQGTSRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRAR-YHLV 943
            |..|||:|:||:.|||:..|.||::|.|.:::|.|:.|||:.||:..|.|||.:||||.| ||..
plant   902 GGIGTSKPTHYYTLWDELGFTSDQVQKLIFEMCFTFTRCTKPVSLVPPVYYADMVAFRGRMYHEA 966

  Fly   944 ---EKEHDSGEGSHQSGCS----------EDRTPGAMARAITVHADTKKVMYF 983
               ||......|:..|..|          ||:.      ...:||:.:.||:|
plant   967 SSREKNFKQPRGASTSAASLASSLSSLTIEDKA------IFKLHAELENVMFF 1013

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AGO1NP_001246314.1 ArgoN 146..275 CDD:406799 39/137 (28%)
ArgoL1 285..335 CDD:400854 15/63 (24%)
PAZ_argonaute_like 336..456 CDD:239212 27/121 (22%)
Piwi_ago-like 502..942 CDD:240015 169/453 (37%)
AGO2NP_174413.2 PLN03202 137..957 CDD:215631 272/882 (31%)
ArgoN 164..306 CDD:293095 44/156 (28%)
ArgoL1 317..366 CDD:285861 15/62 (24%)
PAZ 383..488 CDD:280352 26/112 (23%)
Piwi_ago-like 528..963 CDD:240015 168/452 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1041
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D159407at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22891
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.920

Return to query results.
Submit another query.