DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AGO1 and aub

DIOPT Version :9

Sequence 1:NP_001246314.1 Gene:AGO1 / 36544 FlyBaseID:FBgn0262739 Length:984 Species:Drosophila melanogaster
Sequence 2:NP_476734.1 Gene:aub / 34524 FlyBaseID:FBgn0000146 Length:866 Species:Drosophila melanogaster


Alignment Length:968 Identity:221/968 - (22%)
Similarity:392/968 - (40%) Gaps:204/968 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 PSPT------RPQSPS--QAQTSFDTLTSPPAPGSSVNPTAVTSPSAQNVAAG----------GA 92
            |:|.      |.:.|:  :|...|     .|:.|...:|    |.|..|.|:|          |.
  Fly     5 PNPVIARGRGRGRKPNNVEANRGF-----APSLGQKSDP----SHSEGNQASGGNGGGGDAQVGP 60

  Fly    93 TVAGAAATAAQVASALGATTGSVT-PAIATATPATQPDMPVFTCPRRPNLGREGRPIVLRANHFQ 156
            ::..::.:|.|:..:.|...|||. ..:.|....::|  |..|..:    |..|..|.::||:|:
  Fly    61 SIEKSSLSAVQMHKSEGDPRGSVRGRRLITDLVYSRP--PGMTSKK----GVVGTHITVQANYFK 119

  Fly   157 V-TMPRGYVHHYDINIQPDKCPRKVNREIIETMVHAYSKIFGVLKPVFDGRN------------- 207
            | ..|...::.|.::..||....::.|    :.::.:..|.|..  :|||.|             
  Fly   120 VLKRPNWTIYQYRVDFTPDVEATRLRR----SFLYEHKGILGGY--IFDGTNMFCINQFKAVQDS 178

  Fly   208 ----NLYTRDPLPIGNERLELEVTLPGEGKDRIFRVTIKWQAQVSLFNLEEALEGRTRQIPYDAI 268
                .|.|:..   ..|.:|:::...|.     .:.|...|.||....|..|:||          
  Fly   179 PYVLELVTKSR---AGENIEIKIKAVGS-----VQSTDAEQFQVLNLILRRAMEG---------- 225

  Fly   269 LALDVVMRHLPSMTYTPVGRSFFSSPEGYYHP-----LGGGR-EVWFGFHQSVRPSQWKMMLNID 327
            |.|.:|.|:                   ||.|     |...| ::|.|:..|:|..:..::|..:
  Fly   226 LDLKLVSRY-------------------YYDPQAKINLENFRMQLWPGYQTSIRQHENDILLCSE 271

  Fly   328 VSATAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGQMRRKYRVCN 392
            :..... :.:.:.:.:.:.  |||        :|..:..|.:.:.|:.|...:   ..:.||:.:
  Fly   272 ICHKVM-RTETLYNILSDA--IRD--------SDDYQSTFKRAVMGMVILTDY---NNKTYRIDD 322

  Fly   393 VTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPC---------LQVGQEHKHTYL 448
            |     ..||.||........|.:...|:..:|.:.:|....|.         ::.|.:.....:
  Fly   323 V-----DFQSTPLCKFKTNDGEISYVDYYKKRYNIIIRDLKQPLVMSRPTDKNIRGGNDQAIMII 382

  Fly   449 PLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDRE----REINNLVKRADFNNDSYVQEFGLT 509
            | |:.........::  .|.:|...:....|..|||.    |..|..:|....:.:: ::.:.:.
  Fly   383 P-ELARATGMTDAMR--ADFRTLRAMSEHTRLNPDRRIERLRMFNKRLKSCKQSVET-LKSWNIE 443

  Fly   510 ISNSMMEVRGRVLPPPKLQYGGRVSTGLTGQQLFPPQNKVSLASPNQGVW--DMRGKQFFTGVEI 572
            :.::::|:..|||||.|:.:|        .|::|....:..        |  :.|....|..|.|
  Fly   444 LDSALVEIPARVLPPEKILFG--------NQKIFVCDARAD--------WTNEFRTCSMFKNVHI 492

  Fly   573 RIWAIACFAPQRTVREDALRNFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRY----LK 633
            ..|.:  ..|.|.:||  .:.|.|...:.::...|.|    |...|...||.....:..    ..
  Fly   493 NRWYV--ITPSRNLRE--TQEFVQMCIRTASSMKMNI----CNPIYEEIPDDRNGTYSQAIDNAA 549

  Fly   634 ITFPGLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNV--NKTSPQTLSNLCLKI----N 692
            ...|.:.:||:..|.:.. |:.:|:.......:.:|.|..|.:  .:..|..|.::..|:    |
  Fly   550 ANDPQIVMVVMRSPNEEK-YSCIKKRTCVDRPVPSQVVTLKVIAPRQQKPTGLMSIATKVVIQMN 613

  Fly   693 VKLGGIN-SILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPS-RYAATVRV 755
            .||.|.. .:::|.       ..::.:|.||.|.|  .||..|..|.|.:||...| ||.:||..
  Fly   614 AKLMGAPWQVVIPL-------HGLMTVGFDVCHSP--KNKNKSYGAFVATMDQKESFRYFSTVNE 669

  Fly   756 QQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFPHVLQHELTAIREACIKLE 820
            ....||:.::: |:.....:..|:......|.||:.:||||.:||...|:..|:..:::   :|:
  Fly   670 HIKGQELSEQM-SVNMACALRSYQEQHRSLPERILFFRDGVGDGQLYQVVNSEVNTLKD---RLD 730

  Fly   821 PEYRPG-------ITFIVVQKRHHTRLFCAEKKEQSGKSGNIPAGTTVDVGITHPTEFDFYLCSH 878
            ..|:..       :|||:|.||.::|.|       :|....:| ||.||..||.|..:||:|.|.
  Fly   731 EIYKSAGKQEGCRMTFIIVSKRINSRYF-------TGHRNPVP-GTVVDDVITLPERYDFFLVSQ 787

  Fly   879 QGIQGTSRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAF 936
            ....||..|:.|:|:.|:...::|:||.|:|::.|.|...:.::.:||..:|||.:||
  Fly   788 AVRIGTVSPTSYNVISDNMGLNADKLQMLSYKMTHMYYNYSGTIRVPAVCHYAHKLAF 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AGO1NP_001246314.1 ArgoN 146..275 CDD:406799 31/146 (21%)
ArgoL1 285..335 CDD:400854 10/55 (18%)
PAZ_argonaute_like 336..456 CDD:239212 22/128 (17%)
Piwi_ago-like 502..942 CDD:240015 120/456 (26%)
aubNP_476734.1 ArgoN 105..219 CDD:293095 27/127 (21%)
PAZ_piwi_like 272..392 CDD:239211 22/139 (16%)
Piwi_piwi-like_Euk 400..849 CDD:240016 128/493 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.