DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AGO1 and Ago1

DIOPT Version :9

Sequence 1:NP_001246314.1 Gene:AGO1 / 36544 FlyBaseID:FBgn0262739 Length:984 Species:Drosophila melanogaster
Sequence 2:NP_001304110.1 Gene:Ago1 / 313594 RGDID:1304619 Length:895 Species:Rattus norvegicus


Alignment Length:881 Identity:640/881 - (72%)
Similarity:729/881 - (82%) Gaps:27/881 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 ASALGATTGSVTPAIATATPATQPDMPVFTCPRRPNLGREGRPIVLRANHFQVTMPRGYVHHYDI 169
            |...||..|:..|          |...||..||||.:|..|:||.|.||:|:|.:|:..|:||::
  Rat     3 AGPSGAAAGAYLP----------PLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEV 57

  Fly   170 NIQPDKCPRKVNREIIETMV-HAYSKIFGVLKPVFDGRNNLYTRDPLPIGNERLELEVTLPGEGK 233
            :|:||||||:||||::|.|| |...:|||..|||:||:.|:||...|||||||::.|||:|||||
  Rat    58 DIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGK 122

  Fly   234 DRIFRVTIKWQAQVSLFNLEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSSPEGYY 298
            ||||:|:|||.|.||...|.|||......:|.:::.||||.||||.||.||||||||||.|||||
  Rat   123 DRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYY 187

  Fly   299 HPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQ 363
            |||||||||||||||||||:.|||||||||||||||||||||:|||||||||:|:||.|||||||
  Rat   188 HPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQ 252

  Fly   364 RVKFTKEIKGLKIEITHCGQMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMK 428
            ||:|||||||||:|:||||||:|||||||||||||..|:||||||:|||||||||:||..||.::
  Rat   253 RVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQ 317

  Fly   429 LRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVK 493
            |:||||||||||||.||||||||||||||||||||||||.||||||||||||||||:.||:.|:|
  Rat   318 LKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMK 382

  Fly   494 RADFNNDSYVQEFGLTISNSMMEVRGRVLPPPKLQYGGRVSTGLTGQQLFPPQNKVSLASPNQGV 558
            .|.:|.|.|:||||:.:.:.|.||.|||||.|.||||||              |: ::|:|||||
  Rat   383 NASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGR--------------NR-AIATPNQGV 432

  Fly   559 WDMRGKQFFTGVEIRIWAIACFAPQRTVREDALRNFTQQLQKISNDAGMPIIGQPCFCKYATGPD 623
            ||||||||:.|:||::|||||||||:..||:.|:|||.||:|||.||||||.|||||||||.|.|
  Rat   433 WDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGAD 497

  Fly   624 QVEPMFRYLKITFPGLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLC 688
            .||||||:||.|:.||||::|:|||||||||||||||||:|||||||||.|||.|||||||||||
  Rat   498 SVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLC 562

  Fly   689 LKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATV 753
            |||||||||||:||||..|..||.:||||||||||||||||.|||||.|||||||||||||.|||
  Rat   563 LKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATV 627

  Fly   754 RVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFPHVLQHELTAIREACIK 818
            |||:.|||||::||.|||||||.||||| .:||.|||.|||||.|||.|.:|.:||.|||:||||
  Rat   628 RVQRPRQEIIEDLSYMVRELLIQFYKST-RFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIK 691

  Fly   819 LEPEYRPGITFIVVQKRHHTRLFCAEKKEQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQG 883
            ||.:|:||||:||||||||||||||:|.|:.|||||||||||||..||||.|||||||||.||||
  Rat   692 LERDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQG 756

  Fly   884 TSRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHD 948
            |||||||:||||||.|.:||||.|||||||||||||||||||||||||.|||||||||||:||||
  Rat   757 TSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHD 821

  Fly   949 SGEGSHQSGCSEDRTPGAMARAITVHADTKKVMYFA 984
            ||||||.||.|..|.|.|:|:|:.||.||.:.||||
  Rat   822 SGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA 857

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AGO1NP_001246314.1 ArgoN 146..275 CDD:406799 72/129 (56%)
ArgoL1 285..335 CDD:400854 46/49 (94%)
PAZ_argonaute_like 336..456 CDD:239212 99/119 (83%)
Piwi_ago-like 502..942 CDD:240015 334/439 (76%)
Ago1NP_001304110.1 PLN03202 26..856 CDD:215631 627/845 (74%)
ArgoN 26..164 CDD:293095 76/137 (55%)
ArgoL1 175..224 CDD:285861 45/48 (94%)
PAZ_argonaute_like 225..345 CDD:239212 99/119 (83%)
Piwi_ago-like 390..815 CDD:240015 334/440 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 532 1.000 Domainoid score I272
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1308 1.000 Inparanoid score I141
OMA 1 1.010 - - QHG58336
OrthoDB 1 1.010 - - D159407at2759
OrthoFinder 1 1.000 - - FOG0000468
OrthoInspector 1 1.000 - - otm45680
orthoMCL 1 0.900 - - OOG6_100361
Panther 1 1.100 - - O PTHR22891
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X379
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.980

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