DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AGO1 and Ago3

DIOPT Version :9

Sequence 1:NP_001246314.1 Gene:AGO1 / 36544 FlyBaseID:FBgn0262739 Length:984 Species:Drosophila melanogaster
Sequence 2:NP_001258122.1 Gene:Ago3 / 313593 RGDID:1309163 Length:860 Species:Rattus norvegicus


Alignment Length:864 Identity:622/864 - (71%)
Similarity:712/864 - (82%) Gaps:26/864 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 PVFTCPRRPNLGREGRPIVLRANHFQVTMPRGYVHHYDINIQPDKCPRKVNREIIETMV-HAYSK 194
            |:...||||..|..|:||.|.||.|||.:|:..|:.|:::|:||||||:||||::::|| |....
  Rat    13 PLLIVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVT 77

  Fly   195 IFGVLKPVFDGRNNLYTRDPLPIGNERLELEVTLPGE-GKDRIFRVTIKWQAQVSLFNLEEALEG 258
            |||..:||:||:.:|||.:|||:....::|:|||||| ||||.|:|::|:.::||...|.|.|.|
  Rat    78 IFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSVKFVSRVSWHLLHEVLTG 142

  Fly   259 RT--------RQIPYDAILALDVVMRHLPSMTYTPVGRSFFSSPEGYYHPLGGGREVWFGFHQSV 315
            ||        :.|..:.:.|:|||:||||||.||||||||||:||||.|||||||||||||||||
  Rat   143 RTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSV 207

  Fly   316 RPSQWKMMLNIDVSATAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITH 380
            ||:.|||||||||||||||||||||.||||||||.:|:||.:|||||.||||||||||||:|:||
  Rat   208 RPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTH 272

  Fly   381 CGQMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQVGQEHKH 445
            ||.|||||||||||||||..|:||||||||||||.|||:||.:||.::|:||||||||||||.||
  Rat   273 CGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKH 337

  Fly   446 TYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVKRADFNNDSYVQEFGLTI 510
            ||||||||||||||||||||||.||||||||||||||||:.||:.||:.|::..|.:||||...:
  Rat   338 TYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKV 402

  Fly   511 SNSMMEVRGRVLPPPKLQYGGRVSTGLTGQQLFPPQNKVSLASPNQGVWDMRGKQFFTGVEIRIW 575
            .:.|..|.|||||.|.||||||..|               :|:|:.||||||||||.|||||::|
  Rat   403 RDEMAHVTGRVLPAPMLQYGGRNRT---------------VATPSHGVWDMRGKQFHTGVEIKMW 452

  Fly   576 AIACFAPQRTVREDALRNFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKITFPGLQ 640
            ||||||.||..||:.|:.||.||:|||.||||||.|||||||||.|.|.||||||:||.|:.|||
  Rat   453 AIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQ 517

  Fly   641 LVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPS 705
            |::|:|||||||||||||||||:|||||||||.|||.||||||||||||||||||||||:||||.
  Rat   518 LIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPH 582

  Fly   706 IRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMV 770
            .||.||.:||||||||||||||||.|||||||||||||||||||.||||||:.||||||:|:|||
  Rat   583 QRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMV 647

  Fly   771 RELLIMFYKSTGGYKPHRIILYRDGVSEGQFPHVLQHELTAIREACIKLEPEYRPGITFIVVQKR 835
            |||||.||||| .:||.|||.||||||||||..||.:||.|||||||.||.:|:||||:||||||
  Rat   648 RELLIQFYKST-RFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKR 711

  Fly   836 HHTRLFCAEKKEQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFD 900
            ||||||||::.|:.|:|||||||||||..||||.|||||||||.||||||||||||||||||.|.
  Rat   712 HHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFT 776

  Fly   901 SDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPG 965
            :||||.|||||||||||||||||||||||||||||||||||||:|||||.||||.||.|..|.|.
  Rat   777 ADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQ 841

  Fly   966 AMARAITVHADTKKVMYFA 984
            |:|:|:.:|.||.:.||||
  Rat   842 ALAKAVQIHQDTLRTMYFA 860

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AGO1NP_001246314.1 ArgoN 146..275 CDD:406799 64/138 (46%)
ArgoL1 285..335 CDD:400854 45/49 (92%)
PAZ_argonaute_like 336..456 CDD:239212 97/119 (82%)
Piwi_ago-like 502..942 CDD:240015 336/439 (77%)
Ago3NP_001258122.1 ArgoN 73..167 CDD:406799 40/93 (43%)
ArgoL1 177..227 CDD:400854 45/49 (92%)
PAZ_argonaute_like 228..348 CDD:239212 97/119 (82%)
Piwi_ago-like 393..818 CDD:240015 336/440 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 532 1.000 Domainoid score I272
eggNOG 1 0.900 - - E1_KOG1041
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1308 1.000 Inparanoid score I141
OMA 1 1.010 - - QHG58336
OrthoDB 1 1.010 - - D159407at2759
OrthoFinder 1 1.000 - - FOG0000468
OrthoInspector 1 1.000 - - otm45680
orthoMCL 1 0.900 - - OOG6_100361
Panther 1 1.100 - - O PTHR22891
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X379
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

Return to query results.
Submit another query.