DRSC/TRiP Functional Genomics Resources

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Protein Alignment AGO1 and ago1

DIOPT Version :9

Sequence 1:NP_001246314.1 Gene:AGO1 / 36544 FlyBaseID:FBgn0262739 Length:984 Species:Drosophila melanogaster
Sequence 2:NP_587782.1 Gene:ago1 / 2539403 PomBaseID:SPCC736.11 Length:834 Species:Schizosaccharomyces pombe


Alignment Length:843 Identity:278/843 - (32%)
Similarity:436/843 - (51%) Gaps:66/843 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 RPNLGREGRPIVLRANHFQ-VTMPRGYVHHYDINI-QPDKCPRKVNREIIETM-VHAYSKIFGV- 198
            ||..|..|:.|.|:||.|| :::|...::.|.:.: ...:.|||.::.|..:. |..|   ||. 
pombe    12 RPGYGGLGKQITLKANFFQIISLPNETINQYHVIVGDGSRVPRKQSQLIWNSKEVKQY---FGSS 73

  Fly   199 -LKPVFDGRNNLYTRDPLPIGNERLELEVTLPGEGKDRIFRVTIKWQAQVSLFNLEEALEGRTRQ 262
             :..|:|||:..:::..:..|.    ::|.:..|...|....:|:..::::|..|.:.:..:...
pombe    74 WMNSVYDGRSMCWSKGDIADGT----IKVNIGSESHPREIEFSIQKSSKINLHTLSQFVNSKYSS 134

  Fly   263 IP--YDAILALDVVMRHLPSMTYTPVGRSFFSSPEGYYHPLGGGREVWFGFHQSVRPSQWKMMLN 325
            .|  ..:|:.||::::..||.|......|||:...|.  .||||.|.|.||:||:||:|..|.:|
pombe   135 DPQVLSSIMFLDLLLKKKPSETLFGFMHSFFTGENGV--SLGGGVEAWKGFYQSIRPNQGFMSVN 197

  Fly   326 IDVSATAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGQM-----R 385
            :|:|::||::...::..:.|..|..::.:    ||.....:.:::.:.||:...|...:     .
pombe   198 VDISSSAFWRNDSLLQILMEYTDCSNVRD----LTRFDLKRLSRKFRFLKVTCQHRNNVGTDLAN 258

  Fly   386 RKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQVGQEHKHTYLPL 450
            |.|.:...:.:.|. .||.::..||:..:.:||:|||:.:.::|:||:|||:.|   .....||:
pombe   259 RVYSIEGFSSKSAS-DSFFVRRLNGEEQKISVAEYFLENHNVRLQYPNLPCILV---KNGAMLPI 319

  Fly   451 EVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVKRADFNNDSYVQEFGLTISNSMM 515
            |.|.:|.|||...||...||:.||:...:...:|.::|::.|.:.|::.|.|:.::|:.|...|:
pombe   320 EFCFVVKGQRYTAKLNSDQTANMIRFAVQRPFERVQQIDDFVHQMDWDTDPYLTQYGMKIQKKML 384

  Fly   516 EVRGRVLPPPKLQYGGRVSTGLTGQQLFPPQNKVSLASPNQGVWDMRGKQFF--TGVEIRIWAIA 578
            ||..|||..|.::|||.                 .:..|..|.|::|||:|.  ....||.||:.
pombe   385 EVPARVLETPSIRYGGD-----------------CIERPVSGRWNLRGKRFLDPPRAPIRSWAVM 432

  Fly   579 CFAPQRTVREDALRNFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKITF------- 636
            ||...|.:....:.||.|...:.....|:..:.:.....||.....||.    |.||.       
pombe   433 CFTSTRRLPMRGIENFLQTYVQTLTSLGINFVMKKPPVLYADIRGSVEE----LCITLYKKAEQV 493

  Fly   637 ---PGLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGI 698
               |...|..::.......|..:|||.:|:||:.:||..:|::.::.||..:||.:|||||:|||
pombe   494 GNAPPDYLFFILDKNSPEPYGSIKRVCNTMLGVPSQCAISKHILQSKPQYCANLGMKINVKVGGI 558

  Fly   699 NSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEII 763
            |..|:|...| :.|.|.:.||.||.||..|.. ..|||::|.|:|.:..:|.|..|.|...||:|
pombe   559 NCSLIPKSNP-LGNVPTLILGGDVYHPGVGAT-GVSIASIVASVDLNGCKYTAVSRSQPRHQEVI 621

  Fly   764 QELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFPHVLQHELTAIREACIKLEPEYRPGIT 828
            :.:..:|..||..|...| ..:|.|||.:|||.|||||..|:..||:.|:|||..|.|:|.|.|.
pombe   622 EGMKDIVVYLLQGFRAMT-KQQPQRIIYFRDGTSEGQFLSVINDELSQIKEACHSLSPKYNPKIL 685

  Fly   829 FIVVQKRHHTRLFCAEKKEQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQGTSRPSHYHVL 893
            ....|||||.|.| .:.|....::||...||.::..:|||.::||||.||..:||.|.|.||.||
pombe   686 VCTTQKRHHARFF-IKNKSDGDRNGNPLPGTIIEKHVTHPYQYDFYLISHPSLQGVSVPVHYTVL 749

  Fly   894 WDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQS 956
            .|:.....|:.|.|.|.||:.|.|.|.:||:..|.||||||:..|||..|..:....|.|..|
pombe   750 HDEIQMPPDQFQTLCYNLCYVYARATSAVSLVPPVYYAHLVSNLARYQDVTADDTFVETSEAS 812

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AGO1NP_001246314.1 ArgoN 146..275 CDD:406799 31/135 (23%)
ArgoL1 285..335 CDD:400854 23/49 (47%)
PAZ_argonaute_like 336..456 CDD:239212 30/124 (24%)
Piwi_ago-like 502..942 CDD:240015 168/451 (37%)
ago1NP_587782.1 PLN03202 4..833 CDD:215631 278/843 (33%)
ArgoN 12..149 CDD:293095 35/143 (24%)
ArgoL1 163..207 CDD:285861 23/45 (51%)
PAZ_argonaute_like 210..325 CDD:239212 30/122 (25%)
Piwi_ago-like 370..796 CDD:240015 166/450 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 238 1.000 Domainoid score I472
eggNOG 1 0.900 - - E1_KOG1041
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 428 1.000 Inparanoid score I331
OMA 1 1.010 - - QHG58336
OrthoFinder 1 1.000 - - FOG0000468
OrthoInspector 1 1.000 - - oto101469
orthoMCL 1 0.900 - - OOG6_100361
Panther 1 1.100 - - LDO PTHR22891
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3246
SonicParanoid 1 1.000 - - X379
TreeFam 1 0.960 - -
1211.860

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