DRSC/TRiP Functional Genomics Resources

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Protein Alignment AGO1 and wago-4

DIOPT Version :9

Sequence 1:NP_001246314.1 Gene:AGO1 / 36544 FlyBaseID:FBgn0262739 Length:984 Species:Drosophila melanogaster
Sequence 2:NP_496751.1 Gene:wago-4 / 174932 WormBaseID:WBGene00010263 Length:965 Species:Caenorhabditis elegans


Alignment Length:984 Identity:228/984 - (23%)
Similarity:374/984 - (38%) Gaps:228/984 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 TGSVTPAIATATPATQPDMPVFTCPRRPNLGREGRPIVLRANHFQVTMPRGYVHHYDINIQPDKC 176
            |.|..|:...|.||. |.:||.|.|.|..........:.|.....:. |...:  |....:|.||
 Worm     9 TPSGAPSSVHAPPAV-PPVPVPTQPLRSEYQTSNDACIKRLEELNIA-PAAKL--YPTPTEPGKC 69

  Fly   177 PRKVNREIIETMVHAYSKIFGVLKPVFDGRNNLYTRDPLPIGNE-RLELEVTLPGEGKDR----- 235
              .|..||       .:.:||:..    .:::|:.:..:.|..| :...|||...:|||.     
 Worm    70 --GVEAEI-------QTNVFGIEM----HQDSLFYQYSVNITTELKNGKEVTFTKKGKDDFVVTE 121

  Fly   236 --------IFRV-------------TIKWQAQVSLFNLEEALEG------RTRQIPYDA------ 267
                    :||.             .:.:..|..||:..:..:|      :|:.:..|.      
 Worm   122 RHDKCCAILFRALGDYEEFFKTSDSCLIYDGQSILFSNVDLFQGFREGAVKTKYMQLDGGEMDHK 186

  Fly   268 ------ILALDVVMRHLPSMTYT------------------------------PV---------- 286
                  .:.|:|.....|::.:|                              |.          
 Worm   187 DLKSLPCIKLEVFPTKNPAVKFTREAVARRATDSNLDSVSLAYQQILELALTQPCLRNTARYVVF 251

  Fly   287 --GRSFFSSP--EGYYH----PLGGGREVWFGFHQSV------------RPSQWKMMLNIDVSAT 331
              |:.||..|  ||:..    .:|.|::|..|..:::            .||     :.||....
 Worm   252 DHGKMFFIDPLGEGFEKCDVVDVGDGKQVVPGLKKTINFIEGPYGRGRSNPS-----VVIDGMKV 311

  Fly   332 AFYKAQPVIDFMCEVLDIRDINEQ--RKPLTDSQRVKFTKEIKGLKIEITHCGQMRRKYRVCNVT 394
            ||:|.||::|      .:::|..|  ...|...::.:....||||....|:.|: .|.:::..:.
 Worm   312 AFHKNQPILD------KLKEITTQPVEHGLKGLEKDRCAAVIKGLDCYSTYGGR-ERHHKIEGIH 369

  Fly   395 RRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQ 459
            ...|:...|  :|.:|.:  ||||:||.|.|.:.||||....:...:.....:.|:|:..|.:.|
 Worm   370 HEGARNARF--ELNDGGS--CTVAQYFEDVYNITLRYPDTNLIVSKERGNINFYPMELLKISSHQ 430

  Fly   460 RC-IKKLTDMQTSTMIKATARSA--PD-REREINNLVKRADFNNDSYV-QEFGLTISNSMMEVRG 519
            |. |.:||..|:.   |.|..||  || |:|.|......|..::|:.| .:.|:::....:.|:|
 Worm   431 RVQIPQLTSAQSQ---KTTKESAVLPDVRQRLILTGKNAAQISSDNEVLGKMGVSVCEDPLMVKG 492

  Fly   520 RVLPPPKLQYGGRVSTGLTGQQLFPPQNKVSLASPNQGVWDMRGKQFF-TGVEIRIWAIACFAPQ 583
            |.:|..||     .:..:....:....||          |  |..:|. ......:||:......
 Worm   493 RSIPAVKL-----ANAEIGANPINVKDNK----------W--RANRFTRPATAPNVWAMYVVGTA 540

  Fly   584 RT-VREDALRNFTQQLQKISNDAGMPIIGQPCFCKYATGP--------DQVEPMFRYLKITFPGL 639
            .| :..|.|:.|..:...:....|   :..|       .|        |.:|.  |....|....
 Worm   541 STRITLDTLKKFADEFAAMCKSKG---VNMP-------APADISLIHMDAIES--RLYDATKANC 593

  Fly   640 QLVVVVLPGK-TPVYAEVKRV-GDTVLGMATQCVQAKN----VNKTSPQTLSNLCLKINVKLGGI 698
            ..|.::.... |.::...|.: .||  .|..|.::...    :|.....||.|:..|.||||||.
 Worm   594 TFVFIITDDSITTLHQRYKMIEKDT--KMIVQDMKLSKALSVINAGKRLTLENVINKTNVKLGGS 656

  Fly   699 NSILVPSIRPKVFNEPVIFLGADVTHPPAG-----DNKKPSIAAVVG-SMDA-HPSRYAATVRVQ 756
            |.:.|.:   |...:..:.:|..::.||||     :||......|:| :.:| |...::....:.
 Worm   657 NYVFVDA---KKQLDSHLIIGVGISAPPAGTKYAMENKGVLNPNVIGYAYNAQHNQEFSGDFVLN 718

  Fly   757 QHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFPHVLQHELTAIREACIKLEP 821
            ...|:.:..:..:|...|..:.|...|..|.|:|:||.|.|||....::.:|:...|.|.....|
 Worm   719 SASQDTLAPIEDIVMHSLNEYQKFHDGGLPRRVIVYRTGTSEGNHGSIMAYEIPLARAAMRDFSP 783

  Fly   822 EYRPGITFIVVQKRHHTRLF------CAEKKEQSGKSG---------------NIPAGTTVDVGI 865
            :.:  :.:|||.|.|..|.|      .|.:.:.:..:.               ||..|..||..:
 Worm   784 DIQ--LVYIVVSKDHSFRFFKPDLASLASRPQATSSTASRHSAMPAAPKAWDLNIAPGILVDSIV 846

  Fly   866 THPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYY 930
            |:|....|:|.||..:|||::...|.||.||.......|:.:||:|||.:.......|:|.|.|.
 Worm   847 TNPACKQFFLNSHITLQGTAKTPLYTVLADDAKVSMTALEDITYKLCHLHQIVGLPTSLPTPLYV 911

  Fly   931 AHLVAFRAR 939
            |:..|.|.|
 Worm   912 ANEYAKRGR 920

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AGO1NP_001246314.1 ArgoN 146..275 CDD:406799 30/173 (17%)
ArgoL1 285..335 CDD:400854 17/79 (22%)
PAZ_argonaute_like 336..456 CDD:239212 31/121 (26%)
Piwi_ago-like 502..942 CDD:240015 117/483 (24%)
wago-4NP_496751.1 PLN03202 67..897 CDD:215631 204/897 (23%)
PAZ_argonaute_like 316..426 CDD:239212 31/120 (26%)
Piwi 594..924 CDD:366952 91/334 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1041
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22891
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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