DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shot and Clmn

DIOPT Version :9

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:NP_444385.2 Gene:Clmn / 94040 MGIID:2136957 Length:1052 Species:Mus musculus


Alignment Length:1041 Identity:200/1041 - (19%)
Similarity:354/1041 - (34%) Gaps:328/1041 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 VRKVT-TLSRAEENAQPAEDLLPPAKMIRSSELEYRRALPPAIESSSTQRREISDIVVGKEDNVS 223
            ::::| .|||:..::.     |.|......|:..|    ||   :.:|:|    .:.|..:|...
Mouse   140 IKELTGNLSRSSPSSS-----LSPGSGGTDSDSSY----PP---TPTTER----SVAVAVKDQRK 188

  Fly   224 AREALLRWARRSTARYPGVRVNDFTSSWRDGLAFSALVHRNRPDLLDWRKARNDRPRERLETAFH 288
            |.:.||.|.:|.|.:| ||.|.||..|||.||||.|::....|.|:|.::|..|..|:.||.||.
Mouse   189 AIKTLLSWVQRKTRKY-GVAVQDFAGSWRSGLAFLAVIKAIDPSLVDMKQALEDSTRDNLEKAFS 252

  Fly   289 IVEKEYGVTRLLDPEDVDTNEPDEKSLITYISSLYDVFP--EPPS-IHPLFDMESQ-----RRVH 345
            |......:.|||:|||:..:.|||:|::||::...:.||  ||.. ::|  |.|:.     .|:.
Mouse   253 IAHDSLHIPRLLEPEDIMVDMPDEQSIVTYVAQFLERFPELEPEDFVNP--DKEAPIESTFVRIK 315

  Fly   346 EYRDLAQQFIYWCRE--KTAYL--QERSF-PPTLIEMKRLLSDLQRFRSDEVSARKREKSKLIQI 405
            |........:....|  :.||.  ||.|: ||..:.:...|.....|..|...:.|...|....:
Mouse   316 ESPSEQGSRVLLLSENGERAYTVNQETSYPPPDKVFVCDQLESPTGFCLDSAPSHKLSDSSTEFM 380

  Fly   406 YKELERYFE-TVGEVDVEAELRPD----AIEKAWYRMNTALQDREVILQQEIE------------ 453
            ::.:::..: :.|:....||..|:    :..|...|.|:....:.|..:.::.            
Mouse   381 HEIIDQVLQGSTGKTGSIAEPTPESSILSTRKDGRRSNSLPVKKTVHFEADLHKDASCSKDPFYS 445

  Fly   454 ---RLERLQRLADKVQREIKHVDQKLTDLEGRIGEEGRRIERLHPVDAKSIVEAL-----ETEIR 510
               |.|...:...::.::..||..      ..:.:|.::.|:    :|:.::||.     |:.:.
Mouse   446 SDFRFEGSPKATKELSKQDGHVSL------AEVSKEKKKSEQ----EARLVLEAASDKVPESTVD 500

  Fly   511 HLEEPIQDM--NQDCHVLNEGRYPHVSELHKKVNKLHQRWAQLRTNFHTNLVQKLS--GLK---- 567
            .|:...||.  :||                              ::|....|:..|  |.|    
Mouse   501 GLDAVPQDAQPSQD------------------------------SSFCNGTVESPSSQGEKGPPP 535

  Fly   568 -YPVHETTVTRQTRMVVE---SRQIDTNPHF-----------RDLQEHIEWCQNKLKQLLAADYG 617
             .|...|.:...|.:.|:   ...:|...:|           |||.:..     ...|....|..
Mouse   536 SSPGDHTLLANSTELKVQLLTVEPMDKEDYFECIPLKASKFNRDLVDFA-----STSQAFGEDPS 595

  Fly   618 SDLPSVKEELDRQQHEHKIIDQFHTKILNDERQQTKFSGDELALYQQRL---------------- 666
            |...:..||...:.|..|           ..::::|....|....:.||                
Mouse   596 SHEKTRGEEEGSENHAEK-----------PGKRKSKSPRAETEAAESRLEPKKLEPPPKDPEQED 649

  Fly   667 -----------NQLQKVYAELLSTSTKRLSDLDSLQHFLGQASAELQWLNEKE----------QV 710
                       ::..|||.:....||:..|:.:      |:|.:....:.|:|          .:
Mouse   650 QGHALPPETPADKKPKVYEKAKRKSTRHHSEEE------GEAESGFSAVCEEEIPSAPPSTSVSL 708

  Fly   711 EITRDWADKQLD------------LPSVHRYYENLMSELEKREMHFATILDR----GEALLNQQH 759
            |..|..:::.||            :|....||.:.       |:..|.:|:.    ||.|.::  
Mouse   709 ETLRSHSEEGLDFKPSPPLSKISVIPHDLFYYPHY-------EVPLAAVLEAYAEGGEDLKSE-- 764

  Fly   760 PASKCIEAHLTALQQQWAWLLQLTLCLEVHLKHATEYHQFFGEIKDAEQWLAKRDEILNSKFSQS 824
                                       :..|:|..:.:     ::|:.:..|..||         
Mouse   765 ---------------------------DTDLEHPEDSY-----LQDSREEEADEDE--------- 788

  Fly   825 DFGLDQGETLLRGMQDLREELNAFGETVATLQRRAQTVVPLNKRRQPVNR---------QGPVQA 880
                                     |...:.|......:|::.....|:.         :||..|
Mouse   789 -------------------------EEAQSSQSSCSFSLPVDNSYPSVSEHVSHVDGSSEGPTSA 828

  Fly   881 ICAYKQQGQLQIEKGETVTLLDNSGRVKWRVRTAKGQEGPIPGACLLLP--PPDQEAIDAAERLK 943
            :...........:..||        :....|.:.:.||.|.|.    ||  |.:::..:|:...|
Mouse   829 LGPGSPPSHEDHQPKET--------KENGPVESQQSQEPPNPE----LPTKPLEEKLTEASTSSK 881

  Fly   944 RLFDRSVALWQKKHLRLRQNMIF---ATIRVVKGWDFDQFLAMGPEQRTAIRRALNDDA------ 999
            :...|       ||:...::.:|   .|:|     ..|.......|.:...|.:.:|.:      
Mouse   882 KKEKR-------KHMDHVESSLFIAPGTVR-----SSDDLEENSSEHKVPSRNSHSDSSIYIRRH 934

  Fly  1000 -DKLLSEGDPNDPQLRRLRREMDEVNRLFDEFEKRARAEEESKQASRIFTEECLAIKSKLEDMAR 1063
             ::.|.....:..|||......|..||:.:.:.            |:..||..|.......||.|
Mouse   935 TNRSLELDHFSYVQLRNAADLDDRRNRVLNRYN------------SQKLTELILQFYGIRADMKR 987

  Fly  1064 E 1064
            |
Mouse   988 E 988

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401 70/229 (31%)
CH 223..327 CDD:306753 43/103 (42%)
SPEC 471..689 CDD:238103 44/272 (16%)
SPEC 690..866 CDD:238103 26/201 (13%)
SH3 885..922 CDD:327375 6/36 (17%)
SPEC 1047..1250 CDD:238103 7/18 (39%)
SPEC 1153..1390 CDD:238103
PLEC <1498..1526 CDD:197605
Plectin 1949..1981 CDD:307019
DNA_pol3_delta2 <2711..3178 CDD:331068
DUF4775 3026..3357 CDD:330579
SMC_N <4904..5566 CDD:330553
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:321951
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:332967
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
EF-hand_7 8373..8437 CDD:316058
GAS2 8450..8522 CDD:128539
Herpes_ICP4_C 8550..>8795 CDD:332854
ClmnNP_444385.2 Actin-binding 1..288 57/164 (35%)
CH 33..134 CDD:278723
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 148..178 10/45 (22%)
CH 191..286 CDD:278723 42/95 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 391..420 7/28 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 455..545 20/129 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 585..727 25/158 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 758..929 38/262 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0516
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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