DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shot and Vit

DIOPT Version :9

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:NP_083089.1 Gene:Vit / 74199 MGIID:1921449 Length:650 Species:Mus musculus


Alignment Length:552 Identity:94/552 - (17%)
Similarity:174/552 - (31%) Gaps:162/552 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  3292 ERVVTVEEPTITETTVTTTTIT----TTTTSSSEETLPQENTATVKETPLNEPVPSSPAETKEIE 3352
            |.....|:|:|..||:...|:|    |.....:..:..:...|:|..:|..:||.....|.:|: 
Mouse   164 ETTKAYEKPSIPGTTIQPVTLTQAQATPVAEVTHRSTSKPFAASVTNSPRPQPVGHRSQEMEEV- 227

  Fly  3353 QTTNDDQKKPEEIVDTEKKTTEQKPVETIPTEPISTSETTTVTLTTKTTIVDEGKLHPPSDIEQI 3417
                |..|....::|:          ..:|.|.:||..:..         |.:|..:...|:..:
Mouse   228 ----DGWKPGPVLLDS----------GFVPKEELSTQSSEP---------VPQGDPNCKIDLSFL 269

  Fly  3418 IQPHSTSDKHQSLVDFIEQEKGTQPAEGGSNILQNVKDAAKLGALAIVGAPVLAGKALVDALTTE 3482
            |...::..|.:..:.              ...|.:|..|..:|.    ..|::......|...|:
Mouse   270 IDGSTSIGKRRFRIQ--------------KQFLADVVQALDIGP----AGPLVGVVQYGDNPATQ 316

  Fly  3483 KTLKPEHSTSQVVTETVEELPTEIITTSTATLVTKVTTTTTTTTTSTS-----------EGTPDD 3536
            ..|| .|..||.:...:|::......::....::.||.|..:......           :|.|.|
Mouse   317 FNLK-THMNSQDLKTAIEKITQRGGLSNVGRAISFVTKTFFSKANGNRGGAPNVAVVMVDGWPTD 380

  Fly  3537 EALDVVKLPAE--------LVESSVKREVPRTLAIGDAISQKLISPDECQVIVDGEQQSQTVSTL 3593
            :..:|.::..|        .||.:.:|::...:..|.|      |...|:  .:|.......|.|
Mouse   381 KVEEVSRVARESGINVFFITVEGAAERDIQHVVEPGFA------SKAVCR--TNGFYSFNVQSWL 437

  Fly  3594 LKEEQLSPLDEVQIIDDKLIVLQ------QVSYLVDADTELTPQNL-----------YELNIYDP 3641
            ...:.:.||.:.....|:|...:      .:.:::|..:.:...|.           .|..|.|.
Mouse   438 SLHKTVQPLVKRVCDTDRLACSKTCLNSADIGFVIDGSSSMGTSNFRTVLQFVANLSKEFEISDT 502

  Fly  3642 EN-----QYFIDPSTGQKISFHTLVFDMNVFNPETILVKNFSTGKYETLTAALERPLLDRHTGHM 3701
            :.     ||..:         ..|.|..:.:|           .|.:.|:|.       |..|:.
Mouse   503 DTRVGAVQYTYE---------QRLEFGFDKYN-----------SKADILSAI-------RRVGYW 540

  Fly  3702 V-DPKTGKKIPFFECVDRQWIIRANPEEQKPSGIENVTIDTQTGQVVLDDGRVCSIVEAINSGKL 3765
            . ...||..|.:   ...|...::.|.::|.             .:::.|||....|.       
Mouse   541 SGGTSTGAAIQY---ALEQLFKKSKPNKRKV-------------MIIITDGRSYDDVR------- 582

  Fly  3766 DIQSISVRDPVSGEVIPLRMAIELGVVDMQAG 3797
                           ||...|.:.||:....|
Mouse   583 ---------------IPAMAAYQKGVITYAIG 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401
CH 223..327 CDD:306753
SPEC 471..689 CDD:238103
SPEC 690..866 CDD:238103
SH3 885..922 CDD:327375
SPEC 1047..1250 CDD:238103
SPEC 1153..1390 CDD:238103
PLEC <1498..1526 CDD:197605
Plectin 1949..1981 CDD:307019
DNA_pol3_delta2 <2711..3178 CDD:331068
DUF4775 3026..3357 CDD:330579 16/68 (24%)
SMC_N <4904..5566 CDD:330553
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:321951
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:332967
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
EF-hand_7 8373..8437 CDD:316058
GAS2 8450..8522 CDD:128539
Herpes_ICP4_C 8550..>8795 CDD:332854
VitNP_083089.1 LCCL 44..133 CDD:281766
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 198..226 6/27 (22%)
vWFA 265..428 CDD:294047 31/189 (16%)
vWA_collagen 466..626 CDD:238749 31/199 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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