DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shot and Otogl

DIOPT Version :9

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:NP_001171038.1 Gene:Otogl / 628870 MGIID:3647600 Length:2325 Species:Mus musculus


Alignment Length:1225 Identity:229/1225 - (18%)
Similarity:370/1225 - (30%) Gaps:449/1225 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  3907 LVPFDVGVQQCLLKTDNVTWSLPELLQREYYTPSTGKVLNPVTGEEI----LLQQAIEMGFVELE 3967
            |:|...|:.||    .|.|....||.     ||||  |.....|:|.    ....|:..|.:..|
Mouse   805 LIPTPSGLCQC----SNGTVKCDELA-----TPST--VHACPEGKEYFDCRFPDPALPAGGINCE 858

  Fly  3968 TTLVKDVDHDKILPGKE-----AAKVGLLDTVRGTL----SSPNISLDEAFVKGYLISTKKPLSL 4023
            ||......:....|...     ....|:.:. :|..    |.|.|..|..:..|.:|||  |...
Mouse   859 TTCANLAMNFTCAPSSPCISGCVCAAGMAEH-KGKCYVPESCPCIWKDWEYSSGEVIST--PCYT 920

  Fly  4024 VDCLLRGL----YDPSTAKFTI-DDKQLDLKAAIAQKLINPEELVLLDPKTESIISITEAIAKGY 4083
            ..| .||:    |.|..|..|: .|:.......:....|:..::.|:....:|.||:.....|.:
Mouse   921 CVC-RRGMFNCTYYPCPAVCTVYGDRHYHSFDGLEYDYISDCQVFLIKSTDDSDISVISQNKKCF 984

  Fly  4084 LDPI--EGYVINPYASTKLSLHEALENRILIPPKRKR------SLPD------AVYRGLYDPKTG 4134
            .:.|  ...|:.....|::.|::|       |.|:||      |.|:      ..|..:|.|:  
Mouse   985 DNDIVCSKSVLISIGDTEIYLNDA-------PYKQKRSGFFLESRPEYQLWKAGFYIVIYFPE-- 1040

  Fly  4135 QFSNTVTREKLTTERAIRRGILDPDSTV-VNVG-------SGQIIPFGVATETGIVDSKHGTVRD 4191
                    |.:|.       :.|..:|: :.||       :|....|...|...:..|.:..||:
Mouse  1041 --------EDITI-------LWDEKTTIHIKVGPQWKNKLAGLCGNFDKCTSNDMTTSNNIEVRN 1090

  Fly  4192 ADDHPIDFKEAFDRG---ILVEAKKPLRL------------------IEAVVKNVYDEVDGHFVD 4235
            |.    .|.:::..|   .|:||.||...                  :.|..:||        :|
Mouse  1091 AQ----VFGDSWALGQCEDLMEALKPCEAHQNKFPYAKRECSILYSDVFAPCRNV--------ID 1143

  Fly  4236 PKSGEKLNFAEALNTNLLDEHSVQIRDFKTGLYK--QLNL-THAKDTGI--IDAQNSKLLYNNQT 4295
            ..|..|....:..|.||..:............||  |..: .|.:...:  :|.:     |.||.
Mouse  1144 VTSFAKNCHEDTCNCNLGGDCECLCTSVAAYAYKCCQEGVPVHWRSPTVCALDCE-----YYNQG 1203

  Fly  4296 M-----TLKHAFDIGILMDVN----APISIQRA-----------IHQGLFDDKTGKLSDPRTGRQ 4340
            :     .|......|:::..|    :..|:.|:           |..|||.:||..|:       
Mouse  1204 LGEGPYMLASYGQSGLVLGANMTSRSVFSLPRSNNRGNLFFIFMITPGLFKEKTSSLA------- 1261

  Fly  4341 ITLLESMRSFVVNPHLPCYF----DEQTEQMYTLSETCRNGIINRREGVFREPGSNSFVPLGEAL 4401
            :..|||...       |.||    |..|   .:|.....|...::|...|...|  .::|     
Mouse  1262 LVSLESAER-------PNYFLYVHDNDT---LSLKLWRANSEFHQRATFFHHQG--LWIP----- 1309

  Fly  4402 SLGLIVDIENAGFGLYELLS-MGFYETSTRKVLHPVTNRKLNLNEACVEDVVSLSSSLVKHHETG 4465
                       |:..:||.| .|::                         :|.:.||:    :..
Mouse  1310 -----------GYSAFELYSKKGYF-------------------------IVFMGSSV----KAS 1334

  Fly  4466 KYLRLANAIKEQLVDDSRGCYNLGNEQL-DLQAARARGLIVSNRRLLSLELVLRQQLYRP---ET 4526
            ||            |||.......:..: ::||      :|..||:.       :..|.|   ..
Mouse  1335 KY------------DDSEEFKQSSSFSIEEIQA------VVPYRRMC-------EWRYEPCATPC 1374

  Fly  4527 GKFC-DPTTGEYLDLIEAIHSGFIDPATTVFKNQLTGKELPLTEAIENGDIDVSKGRVFDPKSKS 4590
            .|.| ||         ||:...|:.|.                                      
Mouse  1375 FKTCSDP---------EALACTFLPPV-------------------------------------- 1392

  Fly  4591 AYNYDVALSRGILVTITRPLTDRNDVVRRQDSVELLNQTPVSVVISKPREMSLEEAIRYNIIDPK 4655
                     .|.|     |...:|.::   |...|....|...:...|.|.:|...|..:.:.|.
Mouse  1393 ---------EGCL-----PYCPKNMIL---DETTLKCVHPEDCIPLFPTEPALPPDITPSDMTPT 1440

  Fly  4656 TALVRDFDSFKFLPYSVAVERGLVDTTKRTLVDPKALYFAFDPTLIVYVREPVTFDQAAESKCLD 4720
            ..|.                           .:|:    .|||   ||        ..::..||:
Mouse  1441 PGLE---------------------------CEPQ----QFDP---VY--------NCSQYICLN 1463

  Fly  4721 LQTGLLTY-----VPASVPGSATAAPASDDSANDSLTVIETPKVYTLKEAASAGVVDPDSALVKD 4780
            ::.....:     ....:|...........:.:......|.|...::....|....|.:||.:..
Mouse  1464 MEWTFYNWSLNCPKDLEMPDCGFRGWPVQVNTDICCPEWECPCRCSMLSELSIITFDGNSAALSS 1528

  Fly  4781 LAKAKLVRLPEAFRKGLMDANKANVLNTQTSKLCTLQEAYESGLICTPKRSFGLLEAITFNLYNP 4845
            :|...|||:|            ..::.....| |::.   ::|.......|||.:..:.|...|.
Mouse  1529 MASYILVRVP------------GEIVVVHIDK-CSMN---QNGHALKKPASFGRISGLCFKKLNV 1577

  Fly  4846 TNGCLVDPFQMHPDIIRR--RKFTLAEAIGSGLVDPSSTVV-----------RDPSTGVIVPLTA 4897
            |.       .:|..:|.|  ||           ||..|.||           .|..|..::...|
Mouse  1578 TT-------SIHKILINRVVRK-----------VDVDSIVVPLPFSSHELFIEDSGTMYVITTPA 1624

  Fly  4898 AI------SSGLIDATEGRLTDANEPKNNIDLVKAAEKGLLLPAEQRQAVFEKFNMCEENVNDLL 4956
            .:      .:|:||...|       |:.|:   .:..:||.             .:|.:|.:|.|
Mouse  1625 GLIIKWAHLTGIIDIHFG-------PQFNL---SSYTEGLC-------------GICNDNPDDDL 1666

  Fly  4957 KW-----VTTVEQKISSVGGPREKIDELRNQINALKQIKDEIE-SQQRPVATCLE 5005
            :.     :|.:|.....:|.               .:|:...| :.:|||..|.|
Mouse  1667 RMQNGTIITNMEDIELFIGS---------------WEIEKSFEVTMRRPVRNCTE 1706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401
CH 223..327 CDD:306753
SPEC 471..689 CDD:238103
SPEC 690..866 CDD:238103
SH3 885..922 CDD:327375
SPEC 1047..1250 CDD:238103
SPEC 1153..1390 CDD:238103
PLEC <1498..1526 CDD:197605
Plectin 1949..1981 CDD:307019
DNA_pol3_delta2 <2711..3178 CDD:331068
DUF4775 3026..3357 CDD:330579
SMC_N <4904..5566 CDD:330553 21/108 (19%)
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:321951
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:332967
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
EF-hand_7 8373..8437 CDD:316058
GAS2 8450..8522 CDD:128539
Herpes_ICP4_C 8550..>8795 CDD:332854
OtoglNP_001171038.1 VWD 114..260 CDD:365869
C8 312..373 CDD:370094
TIL 386..434 CDD:366828
VWD 463..625 CDD:214566
C8 669..732 CDD:370094
TIL 736..791 CDD:366828
VWD 930..1085 CDD:214566 35/178 (20%)
C8 1120..1194 CDD:214843 13/81 (16%)
Fascin <1263..1350 CDD:390083 27/155 (17%)
VWD 1498..1671 CDD:214566 45/229 (20%)
C8 1705..1775 CDD:214843 1/2 (50%)
TIL 1778..1836 CDD:366828
GHB_like 2252..2325 CDD:389804
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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