DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shot and Crim1

DIOPT Version :9

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:NP_056615.1 Gene:Crim1 / 50766 MGIID:1354756 Length:1037 Species:Mus musculus


Alignment Length:180 Identity:37/180 - (20%)
Similarity:61/180 - (33%) Gaps:63/180 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  7283 LEKLNN---------LW-----NDVQNATKKRG-----------------SSLDDILSVAEPFWK 7316
            :||.|:         :|     ||:.:..:..|                 ||||.|:||..|...
Mouse   886 IEKKNHRGEIDLEVPMWPTPSENDIIHLPRDMGHLQVDYRDNNRLHPGEDSSLDSIVSVVVPIII 950

  Fly  7317 QLNSVMKTL----KDLEETLSCQEPPAAQPQDIKKQQVALQEIRHEIDQTKPEVEQVRRHGSNLM 7377
            .|:.::..|    |.....|.|......:|..:..|.|:       :|..|....||  .|...|
Mouse   951 CLSIIIAFLLINQKKQWVPLLCWYRTPTKPSSLNNQLVS-------VDCKKGTRVQV--DGPQRM 1006

  Fly  7378 NMCGEPDKPEVKKHIEDLDNAWDNITALYAKREENLIDAMEKAMEFHETL 7427
            ....|||.               ..:..|:.:::|.:    :|..|::|:
Mouse  1007 LRIAEPDA---------------RFSGFYSMQKQNHL----QADNFYQTV 1037

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401
CH 223..327 CDD:306753
SPEC 471..689 CDD:238103
SPEC 690..866 CDD:238103
SH3 885..922 CDD:327375
SPEC 1047..1250 CDD:238103
SPEC 1153..1390 CDD:238103
PLEC <1498..1526 CDD:197605
Plectin 1949..1981 CDD:307019
DNA_pol3_delta2 <2711..3178 CDD:331068
DUF4775 3026..3357 CDD:330579
SMC_N <4904..5566 CDD:330553
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:321951
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:332967
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103 34/168 (20%)
SPEC 7314..7526 CDD:238103 22/118 (19%)
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
EF-hand_7 8373..8437 CDD:316058
GAS2 8450..8522 CDD:128539
Herpes_ICP4_C 8550..>8795 CDD:332854
Crim1NP_056615.1 IB 37..>95 CDD:197525
Cell attachment site. /evidence=ECO:0000255 314..316
VWC 336..390 CDD:214564
VWC 403..456 CDD:214564
Antistasin 539..564 CDD:280912
Antistasin 567..592 CDD:280912
VWC 683..734 CDD:302663
VWC 758..808 CDD:302663
VWC 819..873 CDD:302663
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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