DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shot and clmnb

DIOPT Version :9

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:NP_001003605.1 Gene:clmnb / 445211 ZFINID:ZDB-GENE-040801-124 Length:687 Species:Danio rerio


Alignment Length:674 Identity:153/674 - (22%)
Similarity:245/674 - (36%) Gaps:234/674 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 HYQ--QVTRN--KRIST-EVLGSSVESTKTSQRAPNGHRRVTTHIVRKVTTLSRAEENAQPAEDL 179
            :||  ||||:  |..|| .:|....:|..:.:.:|                       |.|.:|:
Zfish   133 YYQIKQVTRSLEKSPSTFSLLSLPCDSDSSGRSSP-----------------------ASPGDDI 174

  Fly   180 LP--PAKMIRS-SELEYRRALPPAIESSSTQRREISDIVVGKEDNVSAREALLRWARRSTARYPG 241
            ..  |:|..:| ..|:||.                           :|.:.||.||:..||:| |
Zfish   175 FGTLPSKGKKSLKNLKYRG---------------------------TAIKTLLSWAQNCTAKY-G 211

  Fly   242 VRVNDFTSSWRDGLAFSALVHRNRPDLLDWRKARNDRPRERLETAFHIVEKEYGVTRLLDPEDVD 306
            |.:.||..|||.||||.|||....|:.:..|||.:..||..:||||...::..|:..||:|:||.
Zfish   212 VEIRDFGKSWRSGLAFVALVKFFCPEFVHMRKALSSEPRLNMETAFRAAQEWLGIPPLLNPDDVA 276

  Fly   307 TNEPDEKSLITYISSLYD-----------------------------------VFPEPPSIHPLF 336
            .:.|||:|:||||:...:                                   |||...|...|.
Zfish   277 VHSPDEQSIITYIAQFLECCPGHDEDAMSTDSSRGTPNSTERWDRVSTDSDSCVFPSNVSTEALR 341

  Fly   337 DM----ESQRRVHEYRDLAQQFIYWCREKTAYLQERSFPPTLIEMKRLLSDLQRFRSDEVSARKR 397
            |:    |:......|....|:.:..|:|....|..||  .:|:.:|:..:..|  ..|.::.|||
Zfish   342 DLYNLSETSEEEQTYHTGDQESLSVCQENIRDLAARS--ESLLNVKKTSTGGQ--CCDSIAWRKR 402

  Fly   398 ------------EKSK-----LIQIYKELERYFETVGEVDVEAELRPDAIEKAWYRMNTALQDRE 445
                        |.||     |..:..:.|..|..:.|:|.:.......|:   :.:||.:..:.
Zfish   403 WIGSLEDDGNCSEVSKEAVYSLSVLDSDEEDAFSYILELDHKDSGLESNID---FGLNTVMDSQA 464

  Fly   446 VILQQEIERLERLQRLADKVQREIKHV------DQKLTDLEGRIGEEGR-----RIERLHPVDAK 499
            |.....:..:...|      :.|||:.      :.|.||:..|.| .|:     .::::.|..:.
Zfish   465 VEFDLNVASIFETQ------ESEIKYCCCEAQRNLKATDVSVRSG-GGKCTNKITLDQVRPTKSN 522

  Fly   500 SIVEALETEIRHLEE---PIQD---MNQDCHVLNEGRYPHVSELHKKVNKLHQRWAQLRTNFHTN 558
            .:.|      .:.:|   |..|   |||:.              .:|:....:.:...|.:.:.:
Zfish   523 ILTE------NNCDEKTLPASDTLLMNQNS--------------IEKIENNFKLYTDERPDLNCS 567

  Fly   559 LVQKLSGLKYPVHETTVTRQTRMVVESRQIDTNPHFR---DLQEHIEWC--QNKLKQLLAADYGS 618
            |..|                     ||...|...|..   |...|::.|  ::||::.|.     
Zfish   568 LKMK---------------------ESDSADAFTHSNGTDDAFVHLDNCVDEDKLREELF----- 606

  Fly   619 DLPSVKEE-LDRQQHE-HKIIDQFHTKILNDERQQTKFSGDELALYQQRLNQLQKVYAELLSTST 681
             |..|||. ||..|:| :.::|:                           :.|..:..|...:..
Zfish   607 -LCPVKENLLDNDQYEQNNVLDR---------------------------SVLDGITEEPAVSHA 643

  Fly   682 KRLSDLDSLQHFLGQASAELQWLN 705
            ||...||       |||.|:|.|:
Zfish   644 KRKEGLD-------QASYEVQELH 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401 74/271 (27%)
CH 223..327 CDD:306753 47/138 (34%)
SPEC 471..689 CDD:238103 42/241 (17%)
SPEC 690..866 CDD:238103 6/16 (38%)
SH3 885..922 CDD:327375
SPEC 1047..1250 CDD:238103
SPEC 1153..1390 CDD:238103
PLEC <1498..1526 CDD:197605
Plectin 1949..1981 CDD:307019
DNA_pol3_delta2 <2711..3178 CDD:331068
DUF4775 3026..3357 CDD:330579
SMC_N <4904..5566 CDD:330553
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:321951
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:332967
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
EF-hand_7 8373..8437 CDD:316058
GAS2 8450..8522 CDD:128539
Herpes_ICP4_C 8550..>8795 CDD:332854
clmnbNP_001003605.1 CH 29..130 CDD:278723
CH 197..292 CDD:278723 45/95 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0516
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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