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Protein Alignment shot and pigs

DIOPT Version :9

Sequence 1:	NP_725339.1	Gene:	shot / 36542	FlyBaseID:	FBgn0013733	Length:	8805	Species:	Drosophila melanogaster
Sequence 2:	NP_001245550.1	Gene:	pigs / 31596	FlyBaseID:	FBgn0029881	Length:	977	Species:	Drosophila melanogaster

Alignment Length:	812	Identity:	176/812 - (21%)
Similarity:	269/812 - (33%)	Gaps:	271/812 - (33%)

- Green bases have known domain annotations that are detailed below.

  Fly  8180 EQHLQSLKDLDDTIEELLAWLSGLEGTLLNLKHEQLPDEIPPVEKLIEDHKEFMENTARRQNEVD 8244
            |::|::::      |:|..|||.|... |::..:...|.:.....|.: |..::     ||..||
  Fly    16 EEYLEAMR------EDLAEWLSTLYPE-LSINADNFMDRLDTGVALCK-HANYV-----RQAAVD 67

  Fly  8245 RACKPRQLPPGARKPSRSGKT-PVFKGSRDQGLNARKGSRITPTRDTPDRDRLPHYGPRFSPSTS 8308
            ...:.:.......:...||.. |:........|.|.|......      ||.:.::
  Fly    68 YLARRQARNKSMTRSMTSGLAGPILAMGNVHYLPAAKSGTFFA------RDNVSNF--------- 117

  Fly  8309 GPELEFRSPRAKLLWTK--WRDVWMLSWERQRLL---NDHLLYLKDVERARNFSWDDWRKRFLKY 8368
                        :.|.:  .:.:..|.:|...|:   |:..:.|..:|.||.
  Fly   118 ------------ITWCRKSLKIIECLLFETDDLIMRKNEKHVILCLLEVARR------------- 157

  Fly  8369 MNHKKSRLTDLFRKMDKDNNGMIPRDVFIDG-----------ILNTKFDTSGLEMKAV------A 8416
             ..|...|..:..:|::..:..|..|:..:|           .|.|. ::|...|..:      .
  Fly   158 -GAKFGMLAPMLVQMERQIDREIAADIKANGAGCSENGTQTDALETG-NSSAATMTTITTTTVET 220

  Fly  8417 DLFDRNGEGLIDWQEFIAALRPDWQERKP-----------ANDSDKIHDEVKRLVMLCTCRQKFR 8470
            ||:|.:.:...:          |..::.|           .||...:.:.|:.||..|||..:|.
  Fly   221 DLYDDSDDSETE----------DDGDQNPVLMYGPQPQIITNDLKSLDEMVRDLVEKCTCPSQFP 275

  Fly  8471 VFQVGEGKYRFGDSQKLRLVRILRSTVMVRVGGGWVALDEFLQKNDPCRAKGRTNIELREQFI-- 8533
            :.:|.|||||.||::.|..||||||.|||||||||..|..:|.|:||||.:.:....:..:.|
  Fly   276 MVRVSEGKYRIGDTKVLIFVRILRSHVMVRVGGGWDTLSHYLDKHDPCRCRAQHRSSVAARLIPR 340

  Fly  8534 ------LADGVSQSMAAFTPRRSTPNAAATASSSPHAHNG---GSS--------NLPPYM----- 8576
                  .::|:....|.....||.| ||....:||:.:.|   |||        .:||.:
  Fly   341 QSPNHNPSNGIELHKAQVIFERSPP-AARRVFNSPNCNGGPGTGSSCGTGVVGVAVPPTLQNGHS 404

  Fly  8577 --------------------------------------------SGQ---GPIIKVRERSV---R 8591
                                                        |||   .|.:..|..|.   |
  Fly   405 LSPNSGKYRSRSPTPQRKFLNQQANGGGIASATGSSQTVTTDTSSGQLLGSPSLARRSMSPSPRR 469

  Fly  8592 SIPMSRPSRSSLS--ASTPDSL----SDNEGSHGGPSGRYTPRKVTYTSTRTGLTPGGSRAGS-- 8648
            .|.| |..:|||.  :|.|.||    ...|.::||.........|:..|..:|:  .|.:.|:
  Fly   470 LIDM-RKKQSSLDSYSSGPKSLPGYSCSMEEANGGSGVGSAAGGVSSGSAGSGV--AGEQGGANK 531

  Fly  8649 ----KPNSRPLSRQG-----------SKPPSRHG--------STLSLDSTDDH---TPSRIPQRK 8687
                ..|...:|.:|           .|..|.|.        |...||.|...   :||..|..|
  Fly   532 FENISDNGSEISDEGYRSLGVIQSGAQKRESLHSQASIEDAESNARLDQTSSDSQISPSDEPAEK 596

  Fly  8688 PSTG-------------------STASGTTPRPARLSVTTTTTPGSRLNG------------TST 8721
            .:|.                   |...|....||.||.....:.....:|            ..|
  Fly   597 ATTDILEEEDLNGQDREEDQEDYSVCDGPQSLPAILSGAHKLSDKFEQSGVFITDDEITVDIAKT 661

  Fly  8722 ITRKTASGSASPAPTSNGGMSRSSSIPALTGFGFKPI----RRNISGS------------STPSG 8770
            ..:..|:...:|.|       ..|.||.      .|:    ||:|..|            |:.||
  Fly   662 EDQSVANTMGNPTP-------NLSKIPR------SPLAQRRRRSIDNSTCGGAGGSLQDLSSRSG 713

  Fly  8771 MQTPRKSSAEPTFSSTMRRTSRGTTPTEKREP 8802
            :..|..|..:|.:.|...|.|.|.|.|....|
  Fly   714 LPAPAFSRKQPVYRSVRTRNSTGATTTPVAPP 745

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.