DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shot and Actn

DIOPT Version :9

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:NP_001259165.1 Gene:Actn / 31166 FlyBaseID:FBgn0000667 Length:917 Species:Drosophila melanogaster


Alignment Length:1013 Identity:220/1013 - (21%)
Similarity:362/1013 - (35%) Gaps:359/1013 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 RREISDIVVGKEDNVSAREALLRWARRSTARYPGVRVNDFTSSWRDGLAFSALVHRNRPDLLDWR 272
            |..|.||.|   :.::|:|.||.|.:|.||.|..|.|.:|..|::|||||.||:||:||||:|:.
  Fly   136 RFAIQDISV---EEMTAKEGLLLWCQRKTAPYKNVNVQNFHLSFKDGLAFCALIHRHRPDLIDYA 197

  Fly   273 KARNDRPRERLETAFHIVEKEYGVTRLLDPED-VDTNEPDEKSLITYISSLYDVF---------- 326
            |...|.|.|.|.|||.:.||...:.|:|||:| ::|.:|||::::||:|..|..|          
  Fly   198 KLSKDNPLENLNTAFDVAEKYLDIPRMLDPDDLINTPKPDERAIMTYVSCYYHAFQGAQQVGNVT 262

  Fly   327 --PEPPSIHPL-------------------FDMESQRRVHEYRDLAQQFIYWCREKTAYLQERSF 370
              |||...:..                   .:.|::|.:.||..||...:.|.|....:|..|..
  Fly   263 HVPEPTRQYTYVPNNYNAETAANRICKVLKVNQENERLMEEYERLASDLLEWIRRTMPWLNSRQA 327

  Fly   371 PPTLIEMKRLLSDLQRFRSDEVSARKREKSKLIQIYKELE---------RYFETVGEVDVEAELR 426
            ..:|..:::.|.:.:.:|......|..:|:||...:..|:         .|..|.|:...:    
  Fly   328 DNSLAGVQKKLEEYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYLPTEGKTVSD---- 388

  Fly   427 PDAIEKAWYRMNTALQDREVILQQEIERLERLQRLADKVQREIKHVDQKLTDLEGRIGEEGRRIE 491
               |..:|..:..|.:..|..|..|..|||||:.||.|.:                         
  Fly   389 ---ISNSWKGLELAEKAFEEWLLAETMRLERLEHLAQKFK------------------------- 425

  Fly   492 RLHPVDAKSIVEALETEIRHLEEPIQDMN-QDCHVLNEGRYPHVSELHKKVNKLHQRWAQLRTNF 555
              |..||.      |...|..||.:|..: :.|. |||     :..|.||               
  Fly   426 --HKADAH------EDWTRGKEEMLQSQDFRQCK-LNE-----LKALKKK--------------- 461

  Fly   556 HTNLVQKLSGLKYPVHETTVTRQTRMVVESRQIDTNPHFRDLQEHIEWCQNKLKQLLAADYGSDL 620
                           ||         ..||          ||..|    |::::|:.|       
  Fly   462 ---------------HE---------AFES----------DLAAH----QDRVEQIAA------- 481

  Fly   621 PSVKEELDRQQHE---------HKIIDQFHTKILNDERQQTKFSGDELALYQQRLNQLQKVYAEL 676
              :.:||:..::.         .:|.||:.......:|::|..  ||.....::::.|...:|:.
  Fly   482 --IAQELNTLEYHDCVSVNARCQRICDQWDRLGALTQRRRTAL--DEAERILEKIDILHLEFAKR 542

  Fly   677 LSTSTKRLSDL--DSLQHFLGQASAELQWL-NEKEQVEITRDWADKQLDLPSVHRYYENLMSELE 738
            .:.....|...  |.:..|:.....|:|.| ...:|.:.|...|||:.:|      ..||:.|:|
  Fly   543 AAPFNNWLDGTREDLVDMFIVHTMEEIQGLIQAHDQFKATLGEADKEFNL------IVNLVREVE 601

  Fly   739 KREMHFATILDRGEALLNQQHPASKCIEAHLTAL-----QQQWAWLLQLTLCLEVHLKHATEYHQ 798
            .               :.:||.....:|...|.|     .::|:                     
  Fly   602 S---------------IVKQHQIPGGLENPYTTLTANDMTRKWS--------------------- 630

  Fly   799 FFGEIKDAEQWLAKRDEILNSKFSQSDFGLDQGETLLRGMQDLREELNAFGETVATLQRRAQTVV 863
                  |..|.:.:||:.|.::..:     .|...:||  :...|:.|..|..:   :|:...|.
  Fly   631 ------DVRQLVPQRDQTLANELRK-----QQNNEMLR--RQFAEKANIVGPWI---ERQMDAVT 679

  Fly   864 PLNKRRQPVNRQGPV-----------QAICAYKQQGQLQIEKGETVTLLDNSGRVKWRVRTAKGQ 917
            .:.     :..||.:           ||:.|||                                
  Fly   680 AIG-----MGLQGSLEDQLHRLKEYEQAVYAYK-------------------------------- 707

  Fly   918 EGPIPGACLLLPPPDQEAIDAAERLKRLFDRSVALWQKKHLRLRQNMIF---------ATIRVVK 973
                         |:.|.:                 :|.|..::::|||         .|:||  
  Fly   708 -------------PNIEEL-----------------EKIHQAVQESMIFENRYTNYTMETLRV-- 740

  Fly   974 GWDFDQFLAMGPEQRTAIRRALNDDADKLLSEGDPNDPQLRRLRREMDEVNRLFDEFEKRARAEE 1038
            ||  :|.|       |:|.|.:|:..:::|:.......|     .:::|....|:.|:|      
  Fly   741 GW--EQLL-------TSINRNINEVENQILTRDSKGISQ-----EQLNEFRSSFNHFDK------ 785

  Fly  1039 ESKQASRIFTEECLAIKSKL--------EDMARELD-QIILAPLPRDLDSLEHVLEIHSDYERRL 1094
              .:..|:..||   .||.|        :|...:|| |.|||.:..:.....| .:...|:..|.
  Fly   786 --NRTGRLSPEE---FKSCLVSLGYSIGKDRQGDLDFQRILAVVDPNNTGYVH-FDAFLDFMTRE 844

  Fly  1095 HLLEPELKHLQETFRTIALKTPVLKKSLDNLMELWKEL 1132
            .......:.:.::||.:|...|.:...     ||.:||
  Fly   845 STDTDTAEQVIDSFRILAADKPYILPD-----ELRREL 877

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401 80/252 (32%)
CH 223..327 CDD:306753 51/116 (44%)
SPEC 471..689 CDD:238103 37/229 (16%)
SPEC 690..866 CDD:238103 33/181 (18%)
SH3 885..922 CDD:327375 1/36 (3%)
SPEC 1047..1250 CDD:238103 23/95 (24%)
SPEC 1153..1390 CDD:238103
PLEC <1498..1526 CDD:197605
Plectin 1949..1981 CDD:307019
DNA_pol3_delta2 <2711..3178 CDD:331068
DUF4775 3026..3357 CDD:330579
SMC_N <4904..5566 CDD:330553
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:321951
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:332967
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
EF-hand_7 8373..8437 CDD:316058
GAS2 8450..8522 CDD:128539
Herpes_ICP4_C 8550..>8795 CDD:332854
ActnNP_001259165.1 CH_ACTN_rpt1 31..135 CDD:409063
CH_ACTN_rpt2 139..252 CDD:409065 54/115 (47%)
SPEC 302..525 CDD:238103 66/332 (20%)
SPEC 420..647 CDD:238103 66/377 (18%)
SPEC 538..760 CDD:238103 61/357 (17%)
EFh 775..842 CDD:238008 19/78 (24%)
EFhand_Ca_insen 847..913 CDD:400872 8/36 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439909
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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