DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shot and Dsp

DIOPT Version :9

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:XP_225259.4 Gene:Dsp / 306871 RGDID:1305794 Length:2877 Species:Rattus norvegicus


Alignment Length:3055 Identity:578/3055 - (18%)
Similarity:1046/3055 - (34%) Gaps:911/3055 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   449 QQEIERLERLQRLADKVQREIKHVDQKLTDLEGRIGEE-----GRRIER--LHPVDAKSIVEALE 506
            |..|:.|  ||..||.:.|.     :.:...|.:.||.     .|.::.  ....|...|::.|.
  Rat    77 QNTIQEL--LQNCADCLMRA-----ELIAQPELKFGEGIQLAWNRELDEYFTQANDQMEIIDGLI 134

  Fly   507 TEIRHLEEPIQDMNQDCHVLNEGRYPHVSELHKKVNKLHQRWAQLRTNF-------HTNLVQKLS 564
            .|:|.:.:|.....:....|.|    .:..|:|.::....|.|..:..:       .....::|:
  Rat   135 REMRQMGQPCDAYQKRLLQLQE----QMRALYKAISAPRVRRASSKGGYTCQSGSGWDEFTKRLT 195

  Fly   565 GLKYPVHETTVTRQTRMVVESRQIDTNPHFRDLQEHIEWCQNKLKQLLAADYGSDLPSVKEELDR 629
            |                                 |.:.|.:.:..::....:|.|..||::.::.
  Rat   196 G---------------------------------ECLGWMRQQRAEMDLMAWGVDSGSVEQHINS 227

  Fly   630 QQHEHKIIDQFH---TKILNDERQQTKFSGDELALYQQRLNQLQKVYAELLSTSTKRLSDLDSLQ 691
            .:..|..|..:.   .||..|.|:::       |:|     ||::.|..||..|.:|:..|..||
  Rat   228 HRSIHNAIGDYRWQLDKIKADLREKS-------AIY-----QLEEEYENLLKASFERMDHLRQLQ 280

  Fly   692 HFLGQASAELQWLNEKEQVEITRDWADKQLDLPSVHRYYENLMSELEKREMHFATILDRGEALLN 756
            :.:...|.|:.|:|:.|:.|:..||:||..::......:...||:||.:|.....:....:.|:.
  Rat   281 NIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVL 345

  Fly   757 QQHPASKCIEAHLTALQQQWAWLLQLTLCLEVHLKHATEYHQFFGEIKDAEQWLAKRDEILNSKF 821
            .|||||..|||::..||.||:|:||:|.|::||||....|.|||.|.:..|.:|....:.:..|:
  Rat   346 NQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKY 410

  Fly   822 SQSDFGLDQG---ETLLRGMQDL---REELNAFGETVATLQRRAQTVVPLNKRRQPVNRQGPV-- 878
            .     .|:.   :.||..:::|   ||::..:...|..|..:::.:|.|..|........|:  
  Rat   411 P-----CDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIIL 470

  Fly   879 QAICAYKQQGQLQIEKGETVTLLDNSGRVKWRVRTAKGQEGPIPGACLLLPPPDQEAIDAAERLK 943
            :|:|.|||..:: :.||:...|.||:.|.||.|....|.:..:|...|::|||:..|:|.:.:::
  Rat   471 RALCDYKQDQKI-VHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPPPNPLAVDLSCKIE 534

  Fly   944 RLFDRSVALWQKKHLRLRQNMIFATIRVVKGW-----DFDQFLAMGPEQRTAIRRALNDDADKLL 1003
            :.::..:|||         |.::..::.:..|     |.::..||...:...:|:   :|..|.:
  Rat   535 QYYEAILALW---------NQLYINMKSLVSWHYCMIDIEKIRAMTIAKLKTMRQ---EDYMKTI 587

  Fly  1004 -------------SEGDP--NDPQLRRLRREMDEVNRLFDEFEKRARAEEESKQASRIFTE---- 1049
                         |:|..  .|...||::.:..:..:.:.....:.....:.:..::  ||    
  Rat   588 EDLELHYQDFIKNSQGSEMFGDDDKRRMQSQFTDAQKHYQTLVIQLPGHPQHQTVTK--TEITHV 650

  Fly  1050 -ECLAIK-SKLEDMARELDQ------IILAPLPRDLD------SLEHVLEIHSDYERRLHLLEPE 1100
             .|..:. :|:.:..||.|:      :.|..:.|.::      :|:::|.........:.:...|
  Rat   651 GTCQDVNHNKVIETNRENDKQETWLLMELQKIRRQMEHCEARMTLKNLLLTDQGSTHNITVKINE 715

  Fly  1101 LKHLQETFRTIALKTPVLKKSLDN-------------LMELWKELNTQSGL---HKDRLKLLEAS 1149
            ||.:|...:.:|.....||..|.|             :..|:::|...:|:   :.:.|..:.|.
  Rat   716 LKSVQNDSQALAEVLNQLKDMLANFRGSEKYCYLQNEIFGLFQKLENINGVTDGYLNSLCSVRAL 780

  Fly  1150 LAGLEDNEHVISELENELARHQ----DLPSTAE---GLQQVFKQLNHMQDIITQQQPQMDKMNDA 1207
            |..:...|.::...|..|...:    ||.....   ||:::...||..:.::...:.::.|....
  Rat   781 LQAILQTEDMLKVYEARLTEEETVCLDLDKVEAYRCGLKKIKNDLNLKKSLLATMKTELQKAQQI 845

  Fly  1208 ADQLGRMGVPTKVLGDLKRLHSNVERLNTRWSAVCNQLGERMRSCETAIGLMKNLQSSVQVEESW 1272
            ..|..:. .|...| ||.:....|.:|..||..:..|:..|:...|..|..::|.:.:.|....|
  Rat   846 HSQSSQQ-YPLYDL-DLGKFTEKVTQLTDRWQKIDKQIDFRLWDLEKQIKQLRNYRDNYQSFCKW 908

  Fly  1273 VDGTTER---LSAMPTATS------AYELDKLLGAAIERKPKIENVNVAGGRLIREAKIYDSKCL 1328
            :.....|   |.:|....|      ..|...|......::.|.|.|:..........|.|:.:..
  Rat   909 LYDAKRRQDSLESMKFGDSNTVMRFLNEQKNLHNEISGKRDKSEEVHKIAELCANSIKDYELQLA 973

  Fly  1329 RFVDWLVEARPSFSPPRRDLRPADSDPGATQYYSQRLDNLNTKNDRLLEQLSQRLKTAIEVNGSD 1393
            .:...|                            :.|.|:..|...:.......|:.|.:::.  
  Rat   974 SYTSGL----------------------------ETLLNIPIKRTMVQSPSGVILQEAADIHA-- 1008

  Fly  1394 GLQYAESLQKPLKTFRVDFSAGSVPTGDGYAARQEDLYTTTYSTTQISSTK-------------- 1444
              :|.|.|.:               :||.|....|.|  .:....::.:||              
  Rat  1009 --RYIELLTR---------------SGDYYRFLSEML--KSLEDLKLKNTKIEVLEEELRLARDA 1054

  Fly  1445 TTKSSTKSVYSSDGLDAASQEVSTAGLPQSQIQFNEIRTLKRSQQLGGHSVLDIAGIRDPRTGRV 1509
            .:::..|:.:....|.....|.|     |.:.:...:..|||..:|.|.|.....   |...|::
  Rat  1055 NSENCNKNKFLDQNLQKYQAECS-----QFKAKLVSLEELKRQAELDGKSAKQNL---DKCYGQI 1111

  Fly  1510 LTIGEAIQLRILDVRTGEMLVGDRRITLEQAADQGLID---LQLAKQ------------------ 1553
            ..:.|.|.....::...:.    ||.|:|...||...|   ||.|:|                  
  Rat  1112 KELNEKITRLTYEIEDEKR----RRKTVEDRFDQQKNDYDQLQKARQCEKESLGWQKLESEKAIK 1172

  Fly  1554 ------------LLEPGAGRDASGRELS-LLEVIQREISEAESGYETAEKRIKVNNTVTVEQTSG 1605
                        |.|.||.:.....||: :......|:|...:.|||   .|.:..|...|.:..
  Rat  1173 EKEYEIERLRVLLQEEGARKREYENELAKVRNHYNEEMSNLRNKYET---EINITKTTIKEISMQ 1234

  Fly  1606 ELGSPENPRNIADAITAGSVDTKTGLYRVKSGQTISLAEAYERGYLIRHESVTIKSNALCLSDAI 1670
            :....:|.||..|.::..:.|.|..:.|:..    |:.:|.|:..  |.|...::..| |.|:.:
  Rat  1235 KEDDSKNLRNQLDRLSRENRDLKDEIVRLND----SILQATEQRR--RAEENALQQKA-CGSEIM 1292

  Fly  1671 ---AHGLVDGAGWIADRNSGDKFRLDSAIANQLIDASVREVVDAKRD---TKITLQEALQSGVLN 1729
               .|..|:....|..|:.      |:|...|.::.:.:.:.|..::   .|...||..:     
  Rat  1293 QKKQHLEVELKQVIQQRSE------DNARHKQSLEEAAKTIQDKNKEIERLKAEYQEEAK----- 1346

  Fly  1730 AKTGRYVNEVTKEKLTFAE----ARNR---QLIVKPYTLKDI------------CDLNLLDKQ-- 1773
             :...|.||::|.:.::.|    .||:   ::.:...|:..:            ..::.|.::  
  Rat  1347 -RRWEYENELSKVRNSYDEEIISLRNKFETEINITKTTIHQLTMQKEEDTSGYRAQIDNLTRENR 1410

  Fly  1774 -------------AQITSPMRREKLSIMQAIEAG------------------------------V 1795
                         ||.|..:||.:.::.|...:|                              .
  Rat  1411 SLSEEVKRLKNTLAQTTENLRRVEENVQQQKASGSEMSQRKQQLEIELRQVSQMRTEESMRYKQS 1475

  Fly  1796 LDG-----------------------NLLKCITKRKGELVTLQEAI--ADGIVLPAECKYR---- 1831
            ||.                       |..||:.....:|..:|..:  |:.....|..|.:    
  Rat  1476 LDDAAKTIQDKNKEIERLKQLVDKETNERKCLEDENSKLQRVQYDLQKANNSATEAMSKLKVQEQ 1540

  Fly  1832 -------DFMTGELISIPEAVERGLISSVAQRSIFDIDGFKDLRSNDYVSFNVALSRDLLRRKST 1889
                   |:   |.:|....|:...|:.: |.|:.|:...|.....:........|.:..:||..
  Rat  1541 ELTRLRIDY---ERVSQERTVKDQDITRI-QSSLKDLQLQKQKAEEELSRLKRTASDESSKRKML 1601

  Fly  1890 GFALETGRDSLVPLEVAVS---------------------------EGLVRQEV----------- 1916
            ...||..|.||....|.::                           :|.||::.           
  Rat  1602 EEELEAMRRSLKEQAVKITNLTQQLEQASIVKKRSEDDLRQQRDVLDGHVREKQRTQEELRRLSL 1666

  Fly  1917 -YEMFSRGIGVQNASGKELSVFDLVYHNLIDPKTGYLLDPKTGETVPLDTAIERKFITPEGALLL 1980
             .|...|.:..:..:.|:..:.:..:...|:.|:..|.:.|. |...|.:..|.  :|.|..:|.
  Rat  1667 DVEALRRQLVQEQENVKQAHLRNEHFQKAIEDKSRSLNESKI-EIERLQSLTEN--LTKEHLMLE 1728

  Fly  1981 SSLLNITLTTETVTRTINRYVTIRAGSQEPVDSVLLTFTEAVRQGFIDEERQLFKDPKTGNIYSV 2045
            ..|.|:.|          .|..:|.|..|..:....|.:|...|..|...|.|   ...|.|..:
  Rat  1729 EELRNLRL----------EYDDLRRGRSEADNDKNSTISELRSQLQISNNRTL---ELQGLINDL 1780

  Fly  2046 Q---------------QALNYGLLVPDSN---------------------------QTVPEPTNR 2068
            |               |||.....:.:|.                           |.:.:..||
  Rat  1781 QRERENLRQEIEKFQKQALEASNRIQESKSQCTQVVQERESLLVKIKVLEQDKARLQRLEDELNR 1845

  Fly  2069 -KKTKSTITIVTKQIIPEAEPIK--LNTQHTKYVEKSVEI-PISQELVKP-----------HRVV 2118
             |.|....|.|.:::..|.:.|:  ||...|:|..|...| .|..|..|.           .|:.
  Rat  1846 AKATLEAETRVKQRLECEKQQIQNDLNQWKTQYSRKEETIRKIESEREKSEREKNSLRSEIERLQ 1910

  Fly  2119 SEFINLEK--SSYIEQNVTERQIMELPPGGWRLK---DAIEQRLFNP------------DTGVFH 2166
            :|...:|:  ...:|.:..|.| .:|.....||:   |.:.||.:..            |:....
  Rat  1911 AEIKRIEERCRRKLEDSTRETQ-SQLETERCRLQKEIDKLRQRPYGSHRETQTEYEWTVDSSKLV 1974

  Fly  2167 VQGTDRLVNFEECINKQIINNLSL----------------------------------------- 2190
            ..|..:.|...:....|:|:..:|                                         
  Rat  1975 FDGLRKKVTAMQLYECQLIDKTTLDKLLKGKKSVEEVASEIQPFLRGAGAIAGASASPKEKYSLV 2039

  Fly  2191 ------------------------SVIDPNTGDKISVQSAFERDILDSYGNYTNSRKQVQGMRSA 2231
                                    .:|||:..:|::|.:|..||::|     .:.|:|:.....|
  Rat  2040 EAKRKKFITPESTVMLLEAQAATGGIIDPHRNEKLTVDNAIARDLID-----FDDRQQIYTAEKA 2099

  Fly  2232 ID--ESKIILETVPATRGANQKTILRITKVNNIPDVLEVSTPLKDAPPKFVEVLTCQRELASPEP 2294
            |.  :.....:||..:....:..|.|.|.:.    :||.                          
  Rat  2100 ITGFDDPFSGKTVSVSEAIKKNLIDRETGMR----LLEA-------------------------- 2134

  Fly  2295 LQIAPGAIYDPSTALVIFTQTGETENIFDAARQGLVDEQLIK-----------IVDPTTK----- 2343
             |:|.|.:.||..::.:....        |..:||:|..|.:           .|||.||     
  Rat  2135 -QLASGGVVDPVNSVFLPKDV--------ALARGLIDRDLYRSLNDPRDSQKNFVDPITKKKVSY 2190

  Fly  2344 -------------------------------QPISVTEAIARSIYDPKTATILDSEGQPVDLI-- 2375
                                           ||::|||.:...|..|.|...|:|.....|.:  
  Rat  2191 MQLRERCRIEPHTGLLLLSVQKRSMSFQGIRQPVTVTELVDSGILRPSTVNELESGQISYDEVGE 2255

  Fly  2376 -------------------TATKLGLLSVVGAPLVAAEGALRTVR------FVTDPRTGEQIPVE 2415
                               |..|||:...:...||....||..:.      |:.||.:..::|||
  Rat  2256 RIKDFLQGSSCIAGIYNETTKQKLGIYEAMKIGLVRPGTALELLEAQAATGFIVDPVSNLRLPVE 2320

  Fly  2416 VAYERGIVS---RDQL---HRGRSFDSEPATVEDKVVVLQRMRKV-------------------I 2455
            .||:||:|.   :::|   .|..:..::|.| .:.:.:.|.|.|.                   |
  Rat  2321 EAYKRGLVGIEFKEKLLSAERAVTGYNDPET-GNIISLFQAMNKELIEKGHGIRLLEAQIATGGI 2384

  Fly  2456 LKPKD--------ALRKGIIDEETCEILENTSNFTNPKGEVVNITEALNTGLIDGRRGQVIDPQN 2512
            :.||:        |.::|..:||..|||.:.|:.|  ||                    ..||..
  Rat  2385 IDPKESHRLPVDMAYKRGYFNEELSEILSDPSDDT--KG--------------------FFDPNT 2427

  Fly  2513 NRVLNLRQAVEQKIIDSEQTNHILMPLAKSLSVPRLADQGLIDPQTQTIVHPESGYPLSIHEAIV 2577
            ...|...| ::::.|..|:|...|:||.:.....:.:.:..:..:...||.||:...:|:.||..
  Rat  2428 EENLTYLQ-LKERCIKDEETGLCLLPLKEKKKQVQTSQKNTLRKRRVVIVDPETNKEMSVQEAYK 2491

  Fly  2578 CEVLDPHS-KLHKPEKCTLEE---------------------------AITKGIINADDSTF--N 2612
            ..::|..: |....::|..||                           ||.||::   |..|  .
  Rat  2492 KGLIDYETFKELCEQECEWEEITITGSDGSTRVVLVDRKTGSQYDIQDAIDKGLV---DRKFFDQ 2553

  Fly  2613 YKNKTLNITE-------------------AIEAKLFDPSYDQQKSKVEIPPVGMIFPVAVEKSLV 2658
            |::.:|::|:                   ::...:|..|..:..||:               |.:
  Rat  2554 YRSGSLSLTQFADMISLKNGVGTSSGLSGSVNDDVFSSSRHESVSKI---------------STI 2603

  Fly  2659 EPSKRVVLHPSTKKALPIKQAIEENF-IMSIPYSPKPDAIEVVTAMEQDLID-------VAAQTL 2715
            ...:.:.:..|:     :...:||:. |.:|..:...:.|.:...:|:.::|       :.||..
  Rat  2604 SSVRNLTIRSSS-----LSDPLEESSPIAAIFDTENLEKISITEGIERGIVDSITGQRLLEAQAC 2663

  Fly  2716 T----VPSTGERIPLRQAMENGVLVVKNLSDFVITQKPIPKTEI-METVR------AVHTVTTKT 2769
            |    .|:||:::.|:.|:..|::.    .|.....||..|..| .|.|:      |...|..|.
  Rat  2664 TGGIIHPTTGQKLSLQDAVSQGLID----QDMATRLKPAQKAFIGFEGVKGKKKMSAAEAVKEKW 2724

  Fly  2770 IELMQGYVLISNNEVQNVNTGEV-------CSLEEAKELGILREESTTRETKAAAGESPESVGDV 2827
            :....|...:   |.|.:..|.|       .|.|||...|.:            .|.:.:.:.|:
  Rat  2725 LPYEAGQRFL---EFQFLTGGLVDPEVHGRISTEEAIRKGFI------------DGRAAQRLQDI 2774

  Fly  2828 GTSGDQTVIVEERTQTVVVSSDTRKQEMQVVST------TQSTKDTSVPSVSEIETKGSKEPSKT 2886
              |....::...:|:..:...|...:.|....|      ..|.....:||...:...||:..|::
  Rat  2775 --SSYAKILTCPKTKLKISYKDAMNRSMVEDITGLRLLEAASVSSKGLPSPYNMSAPGSRSGSRS 2837

  Fly  2887  2886
              Rat  2838  2837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401
CH 223..327 CDD:306753
SPEC 471..689 CDD:238103 40/234 (17%)
SPEC 690..866 CDD:238103 56/181 (31%)
SH3 885..922 CDD:327375 12/36 (33%)
SPEC 1047..1250 CDD:238103 47/243 (19%)
SPEC 1153..1390 CDD:238103 43/252 (17%)
PLEC <1498..1526 CDD:197605 4/27 (15%)
Plectin 1949..1981 CDD:307019 8/31 (26%)
DNA_pol3_delta2 <2711..3178 CDD:331068 42/200 (21%)
DUF4775 3026..3357 CDD:330579
SMC_N <4904..5566 CDD:330553
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:321951
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:332967
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
EF-hand_7 8373..8437 CDD:316058
GAS2 8450..8522 CDD:128539
Herpes_ICP4_C 8550..>8795 CDD:332854
DspXP_225259.4 SPEC 197..373 CDD:295325 55/187 (29%)
SPEC 292..457 CDD:238103 53/169 (31%)
Cast 1032..1681 CDD:287183 117/686 (17%)
DUF2570 <1276..>1349 CDD:305162 16/85 (19%)
GBP_C <1318..1412 CDD:303769 14/99 (14%)
coiled coil 1382..1393 CDD:293879 1/10 (10%)
coiled coil 1402..1412 CDD:293879 1/9 (11%)
End3 <1514..1662 CDD:289527 26/151 (17%)
Taxilin 1524..1839 CDD:286771 58/334 (17%)
Plectin 2055..2093 CDD:279071 10/42 (24%)
PLEC 2091..2128 CDD:197605 7/36 (19%)
Plectin 2130..2171 CDD:279071 12/79 (15%)
Plectin 2260..2300 CDD:279071 8/39 (21%)
Plectin 2298..2338 CDD:279071 12/39 (31%)
PLEC 2335..2371 CDD:197605 7/36 (19%)
Plectin 2373..2414 CDD:279071 10/40 (25%)
Plectin <2475..2505 CDD:279071 9/29 (31%)
PLEC 2618..2654 CDD:197605 7/35 (20%)
Plectin 2656..2695 CDD:279071 10/42 (24%)
Plectin 2732..2773 CDD:279071 10/55 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 153 1.000 Domainoid score I4185
eggNOG 1 0.900 - - E2759_KOG0516
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101076
Panther 1 1.100 - - O PTHR23169
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.900

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