DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shot and Ppl

DIOPT Version :9

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:NP_001100446.1 Gene:Ppl / 302934 RGDID:1305511 Length:1754 Species:Rattus norvegicus


Alignment Length:2336 Identity:491/2336 - (21%)
Similarity:859/2336 - (36%) Gaps:740/2336 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   436 RMNTALQDREVILQQEIERLERLQRLADKVQREIKHVDQKL-TDL----EGRIGEEGRRIERLHP 495
            :.:..:|.|.:..::..:.:|:||:.||:|:|.|...:.|: :||    :|::.|  .|...|..
  Rat    12 KYSPTVQTRSISNKELSDLIEQLQKNADQVERNIVDTEAKMQSDLARMQDGQLPE--HRDATLQN 74

  Fly   496 V-DAKSIVEALETE---IRHLEEPIQDM-NQDCHVLNEGRYPHVSELHKKVNKLHQRWAQLRTNF 555
            | |::.::..||.:   .:|::.|..|| .:|...|.| |..::...||::..|..|.|..:.|:
  Rat    75 VSDSEKLLYVLEADSAIAKHMKHPQGDMIAEDIRQLKE-RVTNLRGKHKQMYSLAVREADPKVNW 138

  Fly   556 HTNLVQKLSGLKYPVHETTVTRQTRMVVESRQIDTNPHFRDLQEHIEWCQNKLKQLLAADYGSDL 620
            .. ||.:                                            ||.:|.:..:|:||
  Rat   139 DA-LVDE--------------------------------------------KLDKLSSQSFGTDL 158

  Fly   621 PSVKEELDRQQHEHKIIDQFHTKILNDERQQTKFSGDELALYQQRLNQLQKVYAELLSTSTKRLS 685
            |.|    |.|..:|.|   ||.::        |..|..||..:::.::||..|.:||:.|..|..
  Rat   159 PLV----DSQVEQHNI---FHNEV--------KAIGPHLAKDKEQNSELQAKYQKLLAASQARQQ 208

  Fly   686 DLDSLQHFLGQASAELQWLNEKEQVEITRDWADKQLDLPSVHRYYENLMS-ELEKREMHFATILD 749
            .|.|||.::.:.:.||.||:::.:..|..||:|:.||.||..|.|||.:: .||.:|.....:..
  Rat   209 HLSSLQDYMQRCTNELYWLDQQAKGRIQYDWSDRNLDYPSRRRQYENFINRNLEAKEERINKLHT 273

  Fly   750 RGEALLNQQHPASKCIEAHLTALQQQWAWLLQLTLCLEVHLKHATEYHQFFGEIKDAEQWLAKRD 814
            .|:.||..:||....||||:.|:..:|...|.|.:|.|.|||:..:||||..::|||::.|.|.|
  Rat   274 EGDQLLTAEHPGRNSIEAHMEAVHAEWKEYLNLLICEESHLKYMEDYHQFHKDMKDAQELLRKVD 338

  Fly   815 EILNSKFSQSDFGLDQGETLLRGMQDLREELNAFGETVATLQRRAQTVVPLNKRRQPVNRQGPVQ 879
            ..||.|:|.......|.|.|||.:.|..:.|:.:.:.|..||:|.|.|:||..||:...:..||:
  Rat   339 SDLNQKYSPDFKDRYQIELLLRELDDQEKALDKYEDVVRGLQKRGQQVLPLKYRRETPLKPIPVE 403

  Fly   880 AICAYK-QQGQLQIEKGETVTLLDNSGRVKWRVRTAKGQEGPIPGACLLLPPPDQEAIDAAERLK 943
            |:|.:: .||  .|.:|.:.||..|:|. .|.:..:.|::...|..|.::||.|.||:..::.|.
  Rat   404 ALCDFEGDQG--LISRGYSYTLQKNNGE-SWELTDSTGKKLMAPAVCFIIPPTDPEALALSDSLG 465

  Fly   944 RLFDRSVALWQK----KHLRLRQNMIFATIRVVKGWDFDQFLAMGPEQRTAIRRALNDDADKLLS 1004
            ..: |||.  ||    ||                          ..:||..:.|..|        
  Rat   466 SQY-RSVR--QKAAGSKH--------------------------ALQQRHEVLRTEN-------- 493

  Fly  1005 EGDPNDPQLRRLRREMDEVNRLFDEFEK-----------RARAEEESKQASRIFTEECLAIKSKL 1058
            .||.:|.|.|:|...:|:|....|..||           :.||.|:|.:.::           .|
  Rat   494 PGDASDLQGRQLLAGLDQVASDLDRQEKAITGILRPPLEQGRAIEDSAERAK-----------HL 547

  Fly  1059 EDMARELDQIILAPLPRDLDSLEHVLEIHSDYERRLHLLEPELKHLQETFRTIAL--------KT 1115
            :::..||.||                             |||  .:|.|....|.        .|
  Rat   548 KNITNELLQI-----------------------------EPE--KIQRTAECEAFVQALPGSGTT 581

  Fly  1116 PVLKKSLDNLMELWKELNTQSGLHKDRLKLLEASLAGLEDNEHVISELENELARHQDLPSTAEGL 1180
            |:||..:::..:.:|.|          ::||||:    ::...|.:.|||.|.|.::|.::.|. 
  Rat   582 PLLKTRVEDTNQKYKRL----------VQLLEAA----QEKVDVANRLENSLQRGRELLASHEN- 631

  Fly  1181 QQVFKQLNHMQDIITQQQPQMDKMNDAADQLGRMGVPTKVLGDLKRLHSNVERLNTRWSAVCNQL 1245
                   ..|||   ...|:.|.|.|:..|                   .:|.:.:...|..:.|
  Rat   632 -------RLMQD---DTIPESDYMLDSKRQ-------------------ELEAMASELQAQKSLL 667

  Fly  1246 GERMRSCETAIGLMKNLQSSVQVEESWVDGTTERLSAMPTATSAYELDKL------LGAAIERKP 1304
            ||..::.:.|.....:|.|..|  |...|  .||..|        |:.||      |...:||  
  Rat   668 GEVEQNLQVAKQCSSSLASRFQ--EHCPD--LERQEA--------EVHKLNQRFNNLNQQVER-- 718

  Fly  1305 KIENVNVAGGRLIREAKIYDSKCLRF---VDWLVEARPSFSPPRRDLRPADSDPGATQYYSQRLD 1366
            :.:::..|     |:|  |...|..:   :.:||:. ||:.|...|                .|.
  Rat   719 RAQSLQSA-----RDA--YSEYCRGYDHVLQFLVKT-PSYEPQETD----------------SLS 759

  Fly  1367 NLNTK---NDRLLEQLSQRLKTAIEVNGSDGLQYAESLQKPLKTFRVDFSAGSVPTGDGYAARQE 1428
            .:.||   ...||::::...:.|.:|. :|..||.::::                   .|....|
  Rat   760 QMETKLKNQKNLLDEIASMEQGAQKVY-ADSQQYQQAVK-------------------DYELEAE 804

  Fly  1429 DLYTTTYSTTQISSTKTTKSSTKSVYSSDGLDAASQEVSTAGLPQSQIQFNEIRTLKRSQQLGGH 1493
            .|    .|...:.:.:.:..:.::...|.......:|.:.|.      :|.|:..:.|.      
  Rat   805 KL----RSLLDLENGRNSHVNKRARLQSPAAKVKEEEAALAA------KFTEVNAINRQ------ 853

  Fly  1494 SVLDIAGIRDPRTGRVLTIGEAIQLRILDVRTGEMLVGDRRITLEQAADQGLIDLQLAKQLLEPG 1558
                          |:..:..|:.|                  |.|..:.|:....|  |..|.|
  Rat   854 --------------RLQNLEFALNL------------------LRQQPEAGVTHETL--QGREQG 884

  Fly  1559 AGRDASGRELSLLEVIQREISEAESGYETAEKRIKVNNTVTVEQTSGELGSPENPRNIADAITAG 1623
            :|.:.:.:       ||:|:.      |..|:|.::.|.|...|        |..:.:.|.....
  Rat   885 SGMEETWK-------IQKELE------EEMERRQQLENEVKSAQ--------EEIQTLKDQGPQE 928

  Fly  1624 SVDTKTGLYRV------KSGQTI--SLAEAYERGYLIRHESVTIKSNALCLSDAIAHGLVDGAGW 1680
            |:..|..|.:|      :|.|.:  :|||...:..|::.|...::.....|..            
  Rat   929 SLVRKEVLKKVPDPALEESFQQLQQTLAEEQHKNQLLQEELGALQLRLQALEQ------------ 981

  Fly  1681 IADRNSGDKFRLDSAIANQLIDASVREVV-----DAKRDTKITLQEALQSGVLNAKTGRYVNEVT 1740
             ..|:.|.::             .|:||:     .|:.|..:.|:|.|: |:...|..|....:.
  Rat   982 -ETRDGGQEY-------------VVKEVLRIEPDRAQEDEVLQLREELE-GLRRQKGAREAEVLL 1031

  Fly  1741 KEKLTFAEARNRQLIVKPYTLKDICDLNLLDKQAQITSPMRR----------------EKLSIMQ 1789
            .::...|.|..:..:.:..|.:::..   |....|:.:..||                |:||.:|
  Rat  1032 LQQRVAALAAEKSRVQEKVTEREVVK---LQNDPQLEAEYRRLQEEHQREGTLREKQEEELSFLQ 1093

  Fly  1790 AIEAGVLDGNLLKCITKRKGELVTLQEAIADGIVLPAECKYRDFMTGELISIPEA--VERGLISS 1852
            |         .|:.:.|        :.|:|:|                .|::.|.  ||:   .:
  Rat  1094 A---------KLRRLEK--------ERAMAEG----------------KITVKEVLKVEK---DT 1122

  Fly  1853 VAQRSIFDID-GFKDLRSNDYVSFNVALSRDLLRRKSTGFALETGRDSLVPLEVAVSEGLVRQEV 1916
            .|:|.:.|:. .::|..|....|...  ..:|||:.   :|||.....:|          |:::|
  Rat  1123 AAEREVNDLSRQYEDEASKARTSQRE--KTELLRKI---WALEEENAKVV----------VQEKV 1172

  Fly  1917 YEMFSRGIGVQNASGKELSVFDLVYHNLIDPKTGYLLDPKT-GETVPLDTAI---ERKFITPEGA 1977
            .|                         ::.|      |||. .|...|...:   ||||...|..
  Rat  1173 RE-------------------------IVRP------DPKAESEVANLRLELVEQERKFRGAEEQ 1206

  Fly  1978 LL-----LSSLLN--ITLTTETVTRTINRYVTIRAGSQEPVDSVLLTFTEAVRQGFIDEERQLFK 2035
            |.     |.:|.|  ..:..:.||:.:.:|.|.....||         .:.:|:..:|:.|.:.:
  Rat  1207 LKSYQSELEALRNRGPQVEVKEVTKEVIKYTTDPETEQE---------LQRLREEIMDKTRLIER 1262

  Fly  2036 DPKTGNIYSVQQALNYGLLVPDSNQTVPEPTNRKKTKSTITIVTKQIIPEAEPIKLNTQHTKYVE 2100
            ...  .||.::|.:.   ::.|   |.|:            :.|::::.|....:.:.|..|.||
  Rat  1263 CDL--EIYQLKQEIQ---ILKD---TKPQ------------VQTREVVQEILQFQEDPQTKKEVE 1307

  Fly  2101 KSVEIPISQELVKPHRVVSEFINLEKSSYIEQNVTERQIMELPPGGWRL-KDAIEQRLFNPDTGV 2164
             |:.|.:|:|..|       .::||.....::...:|:..||..|..|: :..:.|....||...
  Rat  1308 -SLRIQLSEEKKK-------LVDLEGEQASQEEKIKRKEEELAQGKERIVRQEVVQYEDEPDLRA 1364

  Fly  2165 FHVQGTDRLVNFEECINKQIINNLSLSVIDPNTGDKISVQ--------SAFERDILDSYGNYTNS 2221
            .....||.:             ::.|..|     ||:.|:        :..||.:       ...
  Rat  1365 EVTAFTDSI-------------DVELRQI-----DKLCVELRRLQHRRAELERQL-------EEL 1404

  Fly  2222 RKQVQGMRSAIDESKIILETVPATRGANQKTILRITKVNNIPDVLEVSTPLKDAPPKFV------ 2280
            .::.|..|:|..|.:.:.:.:.|......||..::|....:  ||: ..|.:......:      
  Rat  1405 ERERQARRAAELEVQRLQQRLAALEQEEAKTGEKVTHTQKV--VLQ-QDPQQTREHALLRAQLEE 1466

  Fly  2281 ----------EVLTCQRELASPEPLQIAPGAIYDPSTALVIFTQTGETENIFDAARQGLVDEQLI 2335
                      |:...:|:||:.|..:|....::..|    :..:.|:||......::.|.:|...
  Rat  1467 ERHRRQLLEGELEPLRRKLAALEKTEIKEKVVFSES----VQVEKGDTEQEIQRLKKSLEEESRS 1527

  Fly  2336 K--IVDPTTKQPISVTEAIARSIYDPKTATILD----------SEGQPVDLITATKLGLLSVVGA 2388
            |  :....|:....::|.   ..|:.|::..||          .|.|.:.|.|.           
  Rat  1528 KRELDSEVTRLEAKLSEL---EFYNSKSSKELDFLREENHKLQLERQNLQLETR----------- 1578

  Fly  2389 PLVAAEGALRTVRFVTDPRTGEQIPVEVAYERGIVSRDQLHRGRSFDSEPATVEDKVVVLQRMRK 2453
                              |...:|.:.....|.:.:...:..|...:|...::|.::..|::|. 
  Rat  1579 ------------------RLQSEIEMAATETRDLKNITMVDSGTHLNSRLWSLEKELDDLKKMS- 1624

  Fly  2454 VILKPKDALRKGIIDEETCEILENTSNFTNPKGEVVNITEALNTGLIDGRRGQVIDPQNNRVLNL 2518
               |.||.    .|||                              :..|.|.|...:..|..:|
  Rat  1625 ---KDKDL----EIDE------------------------------LQRRLGSVAVKREQRENHL 1652

  Fly  2519 RQAVEQKIIDSEQTNHILMPLAKSLSVPRLADQGLIDPQTQTIVHPESGYPLSIHEAIVCEVLD- 2582
            |:::                                     .::.|::|..||..||....::| 
  Rat  1653 RRSI-------------------------------------VVIDPDTGRELSPEEAHRAGLIDW 1680

  Fly  2583 -PHSKLHKPEKCTLEEAITKGIINADDSTFNYK--NKTLNITEAIEAKLFDPS-YDQQKSK 2639
             ...|| :.::|..||...|| .|.:.|..:.:  .|..:|.:|:::....|: ||:..:|
  Rat  1681 KMFVKL-RSQECDWEEISVKG-PNGESSVIHDRKSGKKFSIEDALQSGRLTPAQYDRYVNK 1739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401
CH 223..327 CDD:306753
SPEC 471..689 CDD:238103 53/227 (23%)
SPEC 690..866 CDD:238103 67/176 (38%)
SH3 885..922 CDD:327375 10/37 (27%)
SPEC 1047..1250 CDD:238103 42/210 (20%)
SPEC 1153..1390 CDD:238103 53/248 (21%)
PLEC <1498..1526 CDD:197605 3/27 (11%)
Plectin 1949..1981 CDD:307019 11/40 (28%)
DNA_pol3_delta2 <2711..3178 CDD:331068
DUF4775 3026..3357 CDD:330579
SMC_N <4904..5566 CDD:330553
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:321951
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:332967
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
EF-hand_7 8373..8437 CDD:316058
GAS2 8450..8522 CDD:128539
Herpes_ICP4_C 8550..>8795 CDD:332854
PplNP_001100446.1 SPEC 213..387 CDD:295325 65/173 (38%)
SMC_prok_B <467..1217 CDD:274008 211/1113 (19%)
SMC_prok_B 871..1638 CDD:274008 187/1040 (18%)
DUF342 <899..993 CDD:302792 22/127 (17%)
PLEC <1655..1683 CDD:197605 7/64 (11%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0516
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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