DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shot and Fras1

DIOPT Version :9

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:XP_038947596.1 Gene:Fras1 / 289486 RGDID:1306516 Length:4014 Species:Rattus norvegicus


Alignment Length:3111 Identity:549/3111 - (17%)
Similarity:1000/3111 - (32%) Gaps:973/3111 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1467 STAGLPQSQIQFNEIRTLKRSQQLGGHSVLDIAGIRDPRTGRVLTIGEAIQLR--ILDVRTG--- 1526
            |.||||:| ::|  ..|:...|.......|.|..:...|.      ..|.|::  :|:|..|   
  Rat  1559 SFAGLPES-VRF--YFTVSDGQHTSPEMALTIHLLHSDRQ------PPAFQIKAPLLEVSPGGRT 1614

  Fly  1527 ----EMLVGDRRIT-------LEQAADQGLIDLQLAKQLLEPGAGRDASGRELSLLEVIQREISE 1580
                :::|.|..:.       |::....|::....||..:...||      :....:.::|.:.:
  Rat  1615 PLGLQLVVRDAEVVPEELFFQLQKPPQHGMLMKYTAKSSVTMSAG------DTFTYDEVERNVLQ 1673

  Fly  1581 -AESGYETAEKRIKVN----NTVTVEQTSGELGSPENPRNIADAITAGSVDTKTGLYRVKSGQTI 1640
             ...|....|..::::    .|||..:...|:...||...                 |:..|.::
  Rat  1674 YVHDGSPAWEDNMEISVTDGLTVTTSEVKVEVSPSENREP-----------------RLAPGSSL 1721

  Fly  1641 SLAEAYERGYLIRHESVTIKSNALCLSDAIAHGLVDGAGWIADRNSGDKFRLDS-AIANQLIDAS 1704
            |:..|.:      |.::..:|:...:.|:..    |...||         :|.| .:...|:..|
  Rat  1722 SMTVASQ------HTAIITRSHLAYVDDSSP----DSEIWI---------QLSSLPLYGVLLKTS 1767

  Fly  1705 VREVVDAKRDTKITLQEALQSGVLNAKTGRY--VNEVTKEKLT--FAEARNRQLIVKPYTLKDIC 1765
            ..::.:...|:..|:::      :|:|..||  |.|...:.:|  |           .:::.|: 
  Rat  1768 GPDMEELSGDSNFTMED------INSKNIRYSAVFETEGQSVTDGF-----------HFSVSDM- 1814

  Fly  1766 DLNLLDKQA-QITSPMRREKLSIMQAIEAGVLDGNLLKCITKRKGELVTLQEAIADGIVLPAECK 1829
            |.|.:|.|. .||                                             |.|||..
  Rat  1815 DNNRVDNQVFTIT---------------------------------------------VTPAENP 1834

  Fly  1830 YRDFMTGELISIPEAVERGLISSVAQRSIFDIDGFKDLRSNDYVSFNVALSRDLLRRKSTGFALE 1894
            .......:||::.|    |..:.::....|..:...:|:.:..:..:.......:....||....
  Rat  1835 PHIIAFADLITVDE----GGRAPLSLHHFFATEDQDNLQGDAVIKLSALPKYGCIENTGTGDRFG 1895

  Fly  1895 TGRDSLVPLEVAVSEGLVRQEVYEMFSRGIGVQNASGKELSVFDLVYHNLIDPK----TGYLLDP 1955
            .|.:|.:.....:      |:|.|.:             :..|..| |..|:|.    :.|:.|.
  Rat  1896 PGANSELEASFPI------QDVLENY-------------IYYFQSV-HESIEPTHDVFSFYVSDG 1940

  Fly  1956 K-TGETVPLDTAIERK-------FITPEGALLLS--SLLNITLTTETVTRTINRYVTIRAGSQEP 2010
            . ..|...::..||||       .:.|.|..|.|  ::.|.:|:.:.:....|..:.:.  .::|
  Rat  1941 SGRSEIHSINITIERKNDEPPRMTLRPLGVRLSSGVAISNSSLSLQDLDTPNNELIFVL--MKKP 2003

  Fly  2011 VDSVLL---TFTEAVRQGFIDEERQLFKDPKTGNIYSVQQALN--YGLLVPDSNQTVPEPTNRKK 2070
            ....||   |.::.:..|.:.::         |:.::.|..|.  .|.|..|....|.|      
  Rat  2004 DHGYLLLRPTASDPLENGTVLDQ---------GSSFTYQDILAGLVGYLPGDIYMAVDE------ 2053

  Fly  2071 TKSTITIVTKQIIPEAEPIKLNTQHTKYVEKSVEIPISQELVKPHRVVSEFINLEKSSYIEQNVT 2135
            .:.::|          :.:.::|..   :|..:|:|.|.   .||..::..:.|...|.  ..:|
  Rat  2054 FRFSLT----------DGLHVDTGR---MEIYIELPTSN---IPHLAINRGLQLSAGSV--ARIT 2100

  Fly  2136 ERQIMELPPGGWRLKDAIEQR-----LFNPDTGVFHVQGT--DRL--VNFEECINKQIINNLSLS 2191
            |:.:        |..|...:.     :...|.|..|:|.|  |:|  ::....|......::|..
  Rat  2101 EQHL--------RATDTDSEAGQLVYIVKEDPGAGHLQMTKADKLEQISVRGPIRSFTQADVSQG 2157

  Fly  2192 VIDPNTG-DKISVQSAFERDILDSYGNYTNSRKQVQGMRSAIDES---KIILETVPATRGANQKT 2252
            .|:.:.| .:.....||:.|:::..||            ...|:|   .::.:..|.....|:..
  Rat  2158 QIEYSHGPGEAGGSFAFKFDVVNGEGN------------KLADQSFSINVLEDKSPPVIITNKGL 2210

  Fly  2253 ILRITKVNNIPDVLEVSTPLKDAPPKFVEVLTCQREL------ASPEPLQIAPGAIYDPSTALVI 2311
            :|....|..|.....::|.....|.:.:..:|.|.:|      ||| .:||:.....|.::..|.
  Rat  2211 VLDENSVEKITTAQLLATDQDSKPTELIYRITSQPQLGHLEHVASP-GIQISSFTQADLTSRNVQ 2274

  Fly  2312 FTQTGETENIFDAARQGLVD-----EQLIKIVDPTTKQPISVTEAIARSIYDPKTATILDSEGQP 2371
            :..:..|..:.||....|.|     .|...|........:.:.:.....:.:....||.:.|.:.
  Rat  2275 YVHSSGTGKLSDAFSFVLSDGLHEVTQTFSITIHPVDDSLPLVQNRGMRVQEGVRKTITEFELKA 2339

  Fly  2372 VDLITATKLGLLSVVGAPLVAAEGALRTVRFVTDPRTGEQIPVEVAYERGIVSRDQLHRGRSFD- 2435
            ||:.|                 |....|...|..||.|              :.::..||:.:. 
  Rat  2340 VDVDT-----------------EAESITFTIVQPPRHG--------------TIERTARGQRYQL 2373

  Fly  2436 SEPATVEDKVVVLQRMRKVILKPKDALRKGIIDEETCEILENTSNF--TNPKGEVVNITEALNTG 2498
            :...|:||   :.|..........::|:    |..|..:.:.|:.|  ....||.: :|.|....
  Rat  2374 TSSFTMED---IYQNRVSYSHDGSNSLK----DRFTFTVSDGTNPFFIIEEGGEEI-MTAAPQQF 2430

  Fly  2499 LIDGRRGQVIDPQNNRVLNLRQAVEQKIIDSEQTNHILMPLAKSLSVPRLADQGLIDPQT----- 2558
            |:|   ...:|....|::........:.:|.:.||.|   ..|.|..        :||.|     
  Rat  2431 LVD---ILPVDDGTPRIVTNLGLQWLEYMDGKATNLI---TKKELLT--------VDPDTEDSQL 2481

  Fly  2559 --QTIVHPESGYPLS------------------------IHEAIVCEVLDPHSKLHKPEKCTLEE 2597
              :....|..||..:                        ::|..:.:::|....|.|..|   ..
  Rat  2482 TYEVTTGPMHGYVENKLQPGRVAATFTQEHVNLGLIRYVLYEEKIQKMMDSFQFLVKDSK---PN 2543

  Fly  2598 AITKGIINADDSTFNYKNKTLNITEAIEAKLFDPSYDQQKSKVEIPPVGMIFPVAV-----EKSL 2657
            .::..|.....|..::|..:.|::|...:           ..|.:...|.:...|:     |:..
  Rat  2544 VVSDNIFYIHWSLISFKYTSYNVSEKAGS-----------VSVMVQRTGNLNQYAIVLCRTEQGT 2597

  Fly  2658 VEPSKRVVLHPSTKKALPIKQAIEENFIMSIPYSPKPDAIEVVTAMEQDLIDVAAQTLTVPSTGE 2722
            ...|.||..||.                                  :||.::.|.|.        
  Rat  2598 ASSSSRVSSHPG----------------------------------QQDYVEYAGQV-------- 2620

  Fly  2723 RIPLRQAMENGVLVVKNLSDFVITQKPIPKTEIMETVRAVHTVTTKTIEL-MQGYVLISNNEVQN 2786
            :...|:..::..:|:.:             .::.|.:.:.      |:|| |..|.|:       
  Rat  2621 QFDEREDTKSCTIVIND-------------DDVFENIESF------TVELSMPAYALL------- 2659

  Fly  2787 VNTGEVCSLEEAKELGILREESTTRETKAAAGESPESVG----DVGTSGDQTVIVEERTQTVVVS 2847
               ||   ..:||.:....|:..|.|.........||.|    .:...||.:..|.....||..|
  Rat  2660 ---GE---FTQAKVIINDTEDEPTLEFDKKTYRVNESAGFLFAPIKRQGDPSSAVSAICYTVPKS 2718

  Fly  2848 ------------SDTRKQEMQVVS-------TTQSTKDTSVPSVSEIETKGSKEPSKTLQNVKDA 2893
                        ||.:.:...|.|       .|.||.|..|...||.|.:  :|....|.:..:.
  Rat  2719 AMGSSLYALESGSDFKSRGRSVESRVLLGPGVTTSTCDVMVIDDSEYEEE--EEFEIALADASNN 2781

  Fly  2894 AKLGALGVIAAPVLAGGAIVSGVKSLIKSVKSPTEDAKSTE--------------------KPKE 2938
            |::|.|.|  |.||..|...:...||..:..:.:|||.:.:                    :|.:
  Rat  2782 ARIGRLAV--AKVLISGPNDASTVSLGNTAFTISEDAGTVKVPVIRHGTDLSTFTSVWCATRPSD 2844

  Fly  2939 PQTS-----FIEQERRKELQPQQVPSEVDNLLSETENFISSTTANFIANEKQQDKPDTLPQESNL 2998
            |.::     ::...|:.|..|           ..||.:.:.                |:..::..
  Rat  2845 PASATPGVDYVPSSRKVEFGP-----------GVTEQYCTL----------------TILDDTQY 2882

  Fly  2999 PLEVESTSTLTTTTVTTITTSSTTTETGNLEPVVV-----EDV-STTVKEDKVVVKPST----VP 3053
            |: :|...|.    |..::::.....|...:.|:.     :|| |....:|.::||...    :|
  Rat  2883 PV-IEGLETF----VVFLSSAQGAELTKPSQAVIAINDTFQDVPSMQFSKDLLLVKEKEGVLHIP 2942

  Fly  3054 EDKTEVSKITETITTVTSNETDTVPEKISQKSASE---------ESAKKDPVVTKDTSSRPAETE 3109
            ..::.......::...|.:.:..|.|...::..::         |.||...|...|.|.      
  Rat  2943 IIRSGDLSYESSVRCYTQSHSAQVMEDFEERRNADSSRITFLKGEKAKNCTVYIHDDSM------ 3001

  Fly  3110 TSPKPVQKEPTPDPAQNTEFPESIKKDPTPEPDYKETATEAAQITPKEASPAPTNKNEQSAEPTS 3174
            ..|:...:.....|..|......|.|:            ..|.:|......|||.:.|::|....
  Rat  3002 FEPEEQFRVYLGHPLGNHWSGARIGKN------------SMATVTISNDEDAPTIEFEEAAHQVR 3054

  Fly  3175 KPEPMPRTAKKEEISEIEPPFTAPLAPFV----DQLAETKITEIKTEFKEPVTSSQTITTITTTV 3235
            :|              ..|..||.|:..|    ||...:||              :..|...:..
  Rat  3055 EP--------------AGPDATAVLSVKVIRRGDQNRTSKI--------------RCSTRDGSAQ 3091

  Fly  3236 KTVDEHP------IVEEVDEVSKSEKIVDVEEPTVHQQEPIKVNETSDDSTRTEPTNEIVHEERV 3294
            ..||.:|      ....||.:....:|:..|:...|:...:.:.  .||     |...::.:   
  Rat  3092 SGVDYYPKSRVLKFSPGVDHIFFKVEILSNEDREWHESFSLVLG--PDD-----PVEAVLGD--- 3146

  Fly  3295 VTVEEPTITETTVTTTTITTTTTSSSEETLPQENTAT-VKETPLNEPVPSSPAETKEIEQTTNDD 3358
                        |||.|:|         .|.||...: :...|   |:..:.|:...:|:.:.:.
  Rat  3147 ------------VTTATVT---------ILDQEAAGSLILPAP---PIVVTLADYDHVEELSKEG 3187

  Fly  3359 QKKPEEIVDTEKKTTEQKPVETIPTEPISTSETTTVTLTTKTTIVDEGKLHPPSDIEQIIQPH-- 3421
            .||...                 |..|:       |.:|             |.|      ||  
  Rat  3188 VKKAPS-----------------PGYPL-------VCVT-------------PCD------PHYP 3209

  Fly  3422 ---------STSDKHQSLVDFIEQEKGTQPAEGGSNILQNVKDAAKLGALAIVGAPVLAGKALVD 3477
                     |.:..:|:.|.|..:........|..:..:.:.|:....::         ...::|
  Rat  3210 RYAVMKERCSEAGINQTSVQFSWEVAAPTDGNGARSPFETITDSTPFTSV---------NHKVLD 3265

  Fly  3478 ALTTEKTLKPEHSTSQVVTETVEE-------LPTEIITTSTATLVTKVTTTTTTTTTSTSEGTPD 3535
            ::...:...     .:.|.:.|::       |.:.::|..|.:.:..     |.....|:.|   
  Rat  3266 SIYFSRRFH-----VRCVAKAVDKVGHVGTPLRSNVVTIGTDSAICH-----TPVVAGTARG--- 3317

  Fly  3536 DEALDVVKLPAELVESSVK-REVPRTLAIGDAISQK-----LISP---DECQVIVDGE--QQSQT 3589
               .......|.|....|| :|.|..:.|...|..:     |||.   .....::...  :|...
  Rat  3318 ---FQAQSFIATLKYLDVKHKEHPNRIHISVQIPHQDGMLPLISTMPLHNLHFLLSESIYRQQHV 3379

  Fly  3590 VSTLLKEEQLSPLDEVQIIDDKLIVLQQVSYLVDADTELTPQNLYELNIYDPENQYFIDPSTGQ- 3653
            .|.|:....|..|.|...:||..:          ..|.|.|.       ||...|:  |||..: 
  Rat  3380 CSNLVTARDLRGLSEAGFLDDAGL----------HSTALGPG-------YDRPFQF--DPSVREP 3425

  Fly  3654 -------KISFHTLVFDMNVFNPETILVK---NFSTGKYETLTAALERPLLDRHTGHMVDPKTGK 3708
                   .::..:.|:..:.:...|.|:.   ...|..::...:|  :..|..|           
  Rat  3426 KTIQLYRHLNLKSCVWTFDAYYDMTELIDVCGGSVTADFQVRDSA--QSFLTVH----------- 3477

  Fly  3709 KIP-----FFECVDRQWIIRANPEEQKPSGIENVTIDTQTGQVVLDDGRVCSIVEAINSGKLDIQ 3768
             :|     .:....|.|....:..|.:.|...: |:..:||          ...:::.|.:|.|.
  Rat  3478 -VPLYVSYIYVTAPRGWASLEHHTEMEFSFFYD-TVLWRTG----------IQTDSVLSARLQIL 3530

  Fly  3769 SISVRDPVSGEVIPLRMAIELGV-VDMQAGTVIDIQTLKEIPMELAFQLGFLVPGARKPISLEAA 3832
            .|.:|:  .|     |:.||... ...:...||:..||.::...:      |.|.....|..:..
  Rat  3531 RIYIRE--DG-----RLVIEFKTHAKFRGQFVIEHHTLPDVKSFI------LTPDHLGGIQFDLQ 3582

  Fly  3833 VRKGLYDPETGKLFDS--------ESQNQVDVQKSIEIGLVDPKISLIVDTVTKKEVKLDCAIE- 3888
            :   |:..:|   |||        .|.|:.|......|.|:...:......|...|..|.|... 
  Rat  3583 L---LWSAQT---FDSPHQLWRATSSYNRKDYSGEYTIYLIPCTVQPTQPWVDPGEKSLACTAHA 3641

  Fly  3889 -DDLVLPATGQIKDNKNNTLVP----FDVGVQQC------LLKTDNVTWSLPELLQREYYTPST- 3941
             :..::|...|    :.|..||    .:...|.|      |:..:....||.|:..:..::... 
  Rat  3642 PERFLIPIAFQ----QTNRPVPVVYSLNTEFQLCNNEKVFLMDPNTSDMSLAEMDYKGAFSKGQI 3702

  Fly  3942 --GKVL-NPVTGEEILLQQAIEMGF-VELETTLVKDVDHDKILPGKEAAKVGLLDTVRGTLSS-- 4000
              |:|| ||        :|.:...: ::||...        :..||: ..|...|.. ||:.:  
  Rat  3703 LYGRVLWNP--------EQNLHSAYKLQLEKVY--------LCTGKD-GYVPFFDPT-GTIYNEG 3749

  Fly  4001 -------PNISLDEAFVKGYLISTKKPLSLVDCLLRGLYDPSTAKFTIDDK---QLDLKAAIAQK 4055
                   ||..|...|:   |:...:|                   .:.||   .:..:|..|.:
  Rat  3750 PQYGCIQPNKHLKHRFL---LLDRSQP-------------------EVTDKYFHDVPFEAHFASE 3792

  Fly  4056 LINPE-ELVLLDP-------KTESIISITEAIAKGYLDPIEGYVINPYASTKLSLHEAL------ 4106
            |  |: ::|...|       |.:::..: ||..:.||..|  |:|:|.:.::..:..:|      
  Rat  3793 L--PDFQVVSSMPGVDGFTLKVDALYKV-EAGHQWYLQVI--YIISPDSISRPRVQRSLTASLRR 3852

  Fly  4107 ENRILIPPKRKRSLPDAVYRGLYDPKTGQFSNTVTREKLTTERAIRRGILDP------DSTVVNV 4165
            ..|.|:.|....||.|::   :||.:..|..|....:.|..|      :.:|      ..:..::
  Rat  3853 HQRDLVDPSGWLSLDDSL---IYDNEGDQVKNGTNMKSLNLE------LQEPVIAASLSQSGASI 3908

  Fly  4166 GSG------QIIPFGVA---TETGIVDSKHGTVRDA-DDHPIDFKEAFDRGILVEAKKPLRLIEA 4220
            ||.      .::.|.||   |.......|.....|. :::|::.|                 ::.
  Rat  3909 GSALAALMLLLLLFLVACFITRKCQKQKKKQPPEDTLEEYPLNTK-----------------VDV 3956

  Fly  4221 VVKNVYDEVDGHFVDPKSGEK---LNFAEALNTNLLDEHSVQIRDFKTGLYKQLNL 4273
            ..||.           ..|||   ..:....|.|:|.: |.....||....|:|||
  Rat  3957 AKKNT-----------DKGEKNANRQYCTVRNVNILSD-SEGYYTFKGAKVKKLNL 4000

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401
CH 223..327 CDD:306753
SPEC 471..689 CDD:238103
SPEC 690..866 CDD:238103
SH3 885..922 CDD:327375
SPEC 1047..1250 CDD:238103
SPEC 1153..1390 CDD:238103
PLEC <1498..1526 CDD:197605 6/29 (21%)
Plectin 1949..1981 CDD:307019 10/39 (26%)
DNA_pol3_delta2 <2711..3178 CDD:331068 97/534 (18%)
DUF4775 3026..3357 CDD:330579 63/360 (18%)
SMC_N <4904..5566 CDD:330553
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:321951
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:332967
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
EF-hand_7 8373..8437 CDD:316058
GAS2 8450..8522 CDD:128539
Herpes_ICP4_C 8550..>8795 CDD:332854
Fras1XP_038947596.1 VWC 27..86 CDD:214564
VWC 94..151 CDD:278520
VWC 158..>198 CDD:327433
VWC 224..277 CDD:278520
VWC 284..341 CDD:214564
VWC 368..415 CDD:327433
VSP 405..780 CDD:146106
VSP 728..1059 CDD:146106
FU 1045..1086 CDD:214589
Cadherin_3 1101..1197 CDD:406568
Cadherin_3 1202..1309 CDD:406568
Cadherin_3 1313..1440 CDD:406568
Cadherin_3 1448..1576 CDD:406568 8/19 (42%)
Cadherin_3 1579..1693 CDD:406568 19/125 (15%)
Cadherin_3 1703..1813 CDD:406568 27/162 (17%)
Cadherin_3 1822..1940 CDD:406568 26/186 (14%)
Cadherin_3 1943..2061 CDD:406568 26/144 (18%)
Cadherin_3 2081..2181 CDD:406568 22/109 (20%)
Cadherin_3 2188..2295 CDD:406568 23/107 (21%)
Cadherin_3 2297..2408 CDD:406568 23/148 (16%)
Cadherin_3 2427..2539 CDD:406568 19/125 (15%)
Calx-beta 2555..2652 CDD:413355 22/168 (13%)
Calx-beta 2677..2763 CDD:413355 20/85 (24%)
caca <2782..>3049 CDD:273296 54/318 (17%)
Calx-beta 3041..3135 CDD:413355 24/121 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.