DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shot and R11G1.1

DIOPT Version :9

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:NP_001361923.1 Gene:R11G1.1 / 187815 WormBaseID:WBGene00020010 Length:1745 Species:Caenorhabditis elegans


Alignment Length:1731 Identity:322/1731 - (18%)
Similarity:534/1731 - (30%) Gaps:639/1731 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  2052 GLLVPDSNQTVPEPTNRKKT-----------KSTITIVTKQII----PE----AEPIKLNT---- 2093
            ||.:|   :.||.|.....:           .||:|:.:..:|    |:    ..|:..||    
 Worm   164 GLYLP---KPVPPPPEDHPSLYVEGCSMCSKPSTVTLPSNPVIDYTTPKYPFITSPLLGNTKPPL 225

  Fly  2094 --------QHTK----YVEKS-VEIPISQELVKPHRVVSEFINLEKSS------YIEQNVTERQI 2139
                    :.:|    :.|.| |||.......||:..:.:|.....|:      .:.|:.|.|.|
 Worm   226 SNFPVFPSEESKLGDFFPEPSGVEISRVTGFHKPNEPIGDFFPTHSSTPVPPTEAVTQSHTFRLI 290

  Fly  2140 M--------------------ELPP-------GGWRL------KDAIEQRLFNPDTGVFHVQGTD 2171
            .                    :|||       ..|.:      .|...|....|.|.....:|::
 Worm   291 TIPSISQTQFPQAPLIFPGRPDLPPITAPSPLNNWPIPIVTTTPDPHHQGPLPPITYPTIEEGSE 355

  Fly  2172 RLVNFEECINKQIINNLSLSVIDPNTGDKISVQSAFERDILDSYGNYT-NSRKQVQGMRSAIDES 2235
            ::...:..|   ||:.       |.|..|..:.|.||      ||..| :...|..||       
 Worm   356 KIPPIKPGI---IISR-------PVTSRKPDLPSEFE------YGGGTGDGISQPPGM------- 397

  Fly  2236 KIILETVPATRGANQKTILRITKVNNIPDVLEVSTPLKDAPPKFVEVLTCQRELASPEPLQIAPG 2300
                                    |....:...|.|                 :.:|.|..:.|.
 Worm   398 ------------------------NPFDMLTRPSVP-----------------MTTPGPFDMFPN 421

  Fly  2301 AIYDPSTALVIFTQTGETENIFDAARQGLVDEQ------LIKIVD----PT--TKQPISVTEAIA 2353
            .   |...|...|:..|:|.........:.|||      ||.::.    ||  |.:|:|:     
 Worm   422 V---PPVDLRPVTRPWESEKTKPYPGVTIPDEQKSGTDTLIPLIPGRILPTFATPRPLSI----- 478

  Fly  2354 RSIYDPKTATILDSEGQPVDLITATKLGLLSVVGAPLVAAEGALRT----------VRFVTDPRT 2408
                 |...|...|..:|  .:|..             ...|||.|          |:....|.:
 Worm   479 -----PSFFTTPQSPHRP--FVTQN-------------PPHGALPTLIPQAEIEKYVQTEVPPHS 523

  Fly  2409 GEQIPVEVAYERGIVSRDQLHRGRSFDSEPATVEDKVVVLQRMRKVILKPKDALRKGIIDEETCE 2473
            |.:||                 |..|    .|....:....::.:..::.|..|.....:.:|.:
 Worm   524 GFEIP-----------------GGGF----TTPGSHITHPSKVPEGFIEEKTLLTPSTNNAQTTQ 567

  Fly  2474 ILENTSNFTNPKGEVVNITEALNTGLID-GRRGQVIDPQNN------RVLNLRQAVEQKIIDSEQ 2531
            |..|.:    ||...:..|.  .|.:|. |..|.|.:..||      ...||.:...|.:..|::
 Worm   568 IDRNLT----PKTTTLKATS--RTKIIHVGPNGVVEEIDNNESTKIENETNLGEHEGQIVPGSDK 626

  Fly  2532 TNHILMPLAKSLSVPRLADQGLIDPQTQTIVHPESGYPLSIHEAIVCEVLDPHSKLHKPEKCTLE 2596
            ..|| .|..|:...|......::...:.|.   ||....|:....| :..||     :.:.|...
 Worm   627 VIHI-GPTVKTTPTPSSGTSTIVTENSSTF---ESVSTSSVPTTTV-KTGDP-----QVDDCLRR 681

  Fly  2597 EAITKGIINADDSTFNYKN-------KTLNITEAIEAKLFDPSYDQQKSKVEIPPVGMIFPVAVE 2654
            .:.:.|.:..|.....:||       :||::...               ||::..|     ...:
 Worm   682 MSDSGGSVICDCPNGQFKNTGNGQCEETLSLVVV---------------KVKVNTV-----CNTD 726

  Fly  2655 KSLVEPSKRVVLHPSTKKALPIKQAIEENFIMSIPYSPKPDAIEVVTAMEQDLIDVAAQTLTVPS 2719
            |:.:|..:| :||          |.|.:::...|..:....|:..:.......:....:.||..|
 Worm   727 KASLEQKQR-ILH----------QKIGQSYKSCIRSAEHDSALVAIVQCSDCTLQEIDRLLTTRS 780

  Fly  2720 TGERIPLRQAMENGVLVVKNLSDFVITQKPIPKTEIMETVRAVHTVTTKTIELMQGYVLISNNEV 2784
            .||...|            ||                            |.|.: |..|.||:|.
 Worm   781 FGEPGNL------------NL----------------------------TAEAL-GTDLCSNSEF 804

  Fly  2785 QNVNTGEVCSLEEAKELGILREESTTRETKAAAGES----PE----------------------- 2822
            .:.:....|.|::.......:.:..|.::....|.|    ||                       
 Worm   805 NHCHVYSDCILDDENLRYACKCKKGTTDSSDGYGRSCEGFPEESDCVMVFGICLIVWLIFLLGSF 869

  Fly  2823 ----------------------SVGDVGTSGDQTVIVEERTQTVVVSSDTRKQ--EMQVV---ST 2860
                                  ::......|.|||:|.::....:.....|::  .|:.:   |.
 Worm   870 FLSLLACIACYALCRKRCCRYIAIHPANADGLQTVVVGQKAAKSLEMDGNREKLPHMKAIFAESL 934

  Fly  2861 TQSTK-DTSV-----------------PSVSEIETKGSKEPSKTLQNVKDAAKLGALGVIAAPVL 2907
            ..|.| .|||                 |.:|::..:.::.|:.::.|.:...|:.:|..|:    
 Worm   935 KHSAKGSTSVASAFALADFKRKKVSRPPDMSQVIEEVNENPTASIHNSESLPKVSSLAKIS---- 995

  Fly  2908 AGGAIVSGVKSLIKSVKSPTEDAKSTEKPKEP----QTSFIEQERRKELQPQQVPSEVDNLLSET 2968
                               |..|.|  :|..|    :|..:|:.                     
 Worm   996 -------------------THTANS--EPPTPVGVIETPILEKN--------------------- 1018

  Fly  2969 ENFISSTTANFIANEKQQDKPDTLPQESNLPLEVESTSTLTTTTVTTITTSSTTTETG-----NL 3028
                ||:.:...||:.....| :||    |||.|..|::.:||.:...|......|.|     :.
 Worm  1019 ----SSSVSLVSANDNAPQLP-SLP----LPLPVPITTSASTTNLEETTGKENGREGGGGSHASA 1074

  Fly  3029 EPVVVEDVSTTVKEDKVVVKP---------------STVPEDK--------------TEVSKITE 3064
            :...|.:.........|.|:|               |.:.|.|              .|.|:.|:
 Worm  1075 QEQQVPETERPASSHSVGVQPTIWETYRVLGQQYSKSDLTERKASVDSLEQMFEARLAETSRTTK 1139

  Fly  3065 TITTVTSNETDTVPEKISQKSASEESAKKDPVVTKDTSSRPAETETS-PKPVQKEPTPDPAQNTE 3128
            ||.||.::::|......:.|...::: :|..:|:::|...|...|.: .||  .:.|.|..||.|
 Worm  1140 TIPTVRTDKSDNSAIIFTAKPYKKDT-EKPTLVSEETKKTPDNAEVNLEKP--SDTTQDIKQNLE 1201

  Fly  3129 FPE------------------SIKKDPTP-EPDYKETATEAAQITPK----EASP-APTNKNEQS 3169
            ..:                  |..|..|| .||   :..:.|::.||    |:.| :||  .|:|
 Worm  1202 EQKETDEKETDSKLADMIGVTSFHKPDTPSRPD---SGKKDAKVIPKTGQVESEPYSPT--LEKS 1261

  Fly  3170 AE--------------PTSKPEPMP-------------RTAKKEEISEIEP--PFTAPLAPFVDQ 3205
            .|              |.|...|:|             .||:..|.||::|  |.| |..| ..:
 Worm  1262 LEAALLIEMAKRGIELPLSPKTPIPIATELEKAASANFATAETSEDSEVKPYQPQT-PKKP-ESR 1324

  Fly  3206 LAETKITEIKTEFKEPVTSSQTITTITTTVKTVDEHP------IVEEVDEVSKSEKIV------- 3257
            .:..|.:......|.|.||...:.:....:..:||..      :.:....:.::::|:       
 Worm  1325 KSSAKSSASSKRSKIPSTSQSRVGSAKKQISQIDEQDKEPDVFVPQGAKAIYQTKRILRRSGGAG 1389

  Fly  3258 DVEE--PTVHQQEP-----IKVNETSDDSTR----------------------TEPTNEIVHEER 3293
            .|.|  |:..:.:|     .|::....||..                      :|.:.||..|  
 Worm  1390 GVNELVPSTDESDPEVAFFKKLDRIKQDSRNYPAHPYRKYSRRRKPERTLSSISEKSAEIAAE-- 1452

  Fly  3294 VVTVEEPTITETTVTTTTIT---------------TTTTSSSEET----LPQENTATVKETPLNE 3339
             ..::.|..|..:...||.|               .....:||||    :|:.:.|  :..|   
 Worm  1453 -AALDYPQDTSISCPATTRTFLEPRFSMAPRYVFKRKVVEASEETSDVDMPRLSPA--RHAP--- 1511

  Fly  3340 PVPSSPAETKEIEQTTNDDQKKPEEIVDTEKKTTEQKPVETIPTEPISTSETTTVTLTTKTTIVD 3404
            ||.|||    ||...:.  |:..|.:...|.|...|.|....||:..:       .:..||...:
 Worm  1512 PVVSSP----EIPDVSL--QRSMENLHKLESKVKPQPPYPQTPTKKSN-------LMKKKTGKNE 1563

  Fly  3405 EGKLHPPSDIEQIIQPHSTSDKHQSLVDFIEQEKGTQPAEG 3445
            ....||.|.::        |.:|.|..    ..|.|.|..|
 Worm  1564 SSASHPSSSLQ--------SSRHSSKF----ASKATTPRTG 1592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401
CH 223..327 CDD:306753
SPEC 471..689 CDD:238103
SPEC 690..866 CDD:238103
SH3 885..922 CDD:327375
SPEC 1047..1250 CDD:238103
SPEC 1153..1390 CDD:238103
PLEC <1498..1526 CDD:197605
Plectin 1949..1981 CDD:307019
DNA_pol3_delta2 <2711..3178 CDD:331068 112/615 (18%)
DUF4775 3026..3357 CDD:330579 97/479 (20%)
SMC_N <4904..5566 CDD:330553
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:321951
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:332967
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
EF-hand_7 8373..8437 CDD:316058
GAS2 8450..8522 CDD:128539
Herpes_ICP4_C 8550..>8795 CDD:332854
R11G1.1NP_001361923.1 LDLa 32..64 CDD:197566
LDLa 113..145 CDD:238060
PHA03247 <268..594 CDD:223021 78/444 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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