DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shot and Otog

DIOPT Version :9

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:XP_017177514.1 Gene:Otog / 18419 MGIID:1202064 Length:2917 Species:Mus musculus


Alignment Length:1261 Identity:251/1261 - (19%)
Similarity:405/1261 - (32%) Gaps:373/1261 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  3030 PVVVEDVSTTVKEDKVVVKPSTVPEDKTEVSKITETITTVTSNETDTVPEKISQKSASEESAKKD 3094
            |.|:::|:......:..|:|:  |...||          ...||| .||.::...:::|:...: 
Mouse  1441 PKVLDEVTQRCVYLEDCVEPA--PRGPTE----------TLGNET-LVPGQVPPTTSAEQQLPQ- 1491

  Fly  3095 PVVTKDTSSRPAETETSPKPVQKEPTPDPAQNTEFPESIKKDPTPEPDYKETATEAAQITPKEAS 3159
                    ..|..:..||.||...|                 ||..|:....|||..  .|...|
Mouse  1492 --------GLPGASAYSPAPVPVAP-----------------PTSAPNPPMAATEGQ--APSPGS 1529

  Fly  3160 PAPTNKNEQSAEPTSKPEPMPRTAKKEE-----ISEIEPPFTAPLAPFVDQLAETKITEIKTEFK 3219
            ..||.:.......::.|........:||     ::...||..:...|...|:..:.|....||  
Mouse  1530 TQPTLQTPLGLTTSNFPAGHTEATAREEGAASLLTTSHPPGFSSSLPSSLQMPTSGIVSGATE-- 1592

  Fly  3220 EPVTSSQTI-------TTITTTVKTVDEHPIVEEVDEVSKSEKIVDVEEPTVHQQEPIKVNE--- 3274
               |:..||       ||:.:....:...|::.:.           |..|: |...|:|...   
Mouse  1593 ---TTKVTITFTGSPNTTVASRSPPIPRFPLMTKA-----------VTVPS-HDSFPVKTTPLQP 1642

  Fly  3275 -----------TSDDSTRTEPTNEIVHEERVVTVEEPTITETTVTTTTITTTTTSSSEETLPQEN 3328
                       ||..:|...||:...|....||    .:...|:|:.::...:||||.:.|....
Mouse  1643 SWLWSLSSRPMTSLGATSWPPTSPGSHLSTAVT----KVANKTMTSLSVLAQSTSSSSQPLAAVT 1703

  Fly  3329 TATVKETPLNEPVPSSPAETKEIEQTTNDDQKKPEEIVDTEKKTTEQKPVETIPTEPISTSETTT 3393
            ||        ...|:||..||.:           |.:..|||.......:..:|..|..:.....
Mouse  1704 TA--------HRAPASPLVTKGL-----------EVVSATEKGEAGHSQLTELPVSPPPSPAPID 1749

  Fly  3394 VTLTTKTTIVDEGKLHPPSDIEQ-IIQPHSTS-DKHQSLVDFIEQEKGTQPAEGGSNI-LQNVKD 3455
            :....:.|....|    ||.:.. |:...|.| ..|:.....:...:.|:|....|.: |.....
Mouse  1750 LPHPAQHTTTAPG----PSALSPGILAAGSPSTGAHRPGATALASLEPTRPPHLLSGLPLDTSLP 1810

  Fly  3456 AAKLGALAIVGAPVLAGKALVDALTTEKTLKPEHSTSQVVTE-TVEELPTEIITTSTATLVTKVT 3519
            .||:|..|.|..|  ..|..:      .|..|:|..:.:.|. ||..|...:  :.|..|::.|.
Mouse  1811 LAKVGTSAPVATP--GSKGYI------PTPPPQHQATTLATAMTVSPLTQSL--SLTVPLMSAVE 1865

  Fly  3520 TTTTTTTTSTSEGT--PDDEALDVVKLPAELVESSVKREVPRTLAIGD--------AISQKLISP 3574
            ....:.:....:||  ..|:.|... ||: ...|||...||.|::...        ||..|.:||
Mouse  1866 EQAHSPSPKPPQGTGMAPDQMLGAT-LPS-FGASSVIAGVPPTVSAAPRKSTTQRAAILSKKVSP 1928

  Fly  3575 DECQVIVDGEQQSQTVSTLLKEEQLSPLDEVQIIDDKLIVLQQVSYLVDADTELTPQNLYELNIY 3639
                            .||:.       |.||                ...|||||...:.:...
Mouse  1929 ----------------PTLIS-------DSVQ----------------GGFTELTPIVSHTVTPL 1954

  Fly  3640 DPENQYFIDPSTGQKISFHTLVFDMNVFNPETILVKNFSTGKYETLTAALERPLLDRHTGHMVDP 3704
            ..|       :.|.:.....||       |.|     :|..:....||:.|.||       ::.|
Mouse  1955 ATE-------AEGPRAGTVPLV-------PTT-----YSLSRVSARTASREGPL-------VLLP 1993

  Fly  3705 KTGKKIPFFECVDRQWIIRANPEEQKPSGIENVTIDTQTGQVVLDDGRVC---SIVEAINSGKLD 3766
            :..:..             ..|...:|.  |::.....|.|    .||..   ||.|  .|.:.:
Mouse  1994 QLAEAY-------------GTPAGLQPQ--EDLVRQATTEQ----SGRSAPAKSIAE--ESMEAE 2037

  Fly  3767 IQSISVRDPVSGEVIPLRMAIELGVVDMQAGTVIDIQTLKEIP----------MELAFQLGFLVP 3821
            :.:.:...|::.:.....:.:|        |.:|.:...:..|          :.||.::|    
Mouse  2038 VNTSATCVPIAEQDCVRHICLE--------GQLIRVNQTQHCPQGAVRPRCGVLGLAVRVG---- 2090

  Fly  3822 GARKPISLEAAVRKGLYDPETGKLFD--------------SESQNQ-VDVQ----KSIEIGLVD- 3866
            |.|.....|.|.|..::...:...||              |:|.:: :.|.    ||..:|.:: 
Mouse  2091 GDRCCPQWECACRCSIFPDLSFVTFDGSHAALFKEAIYVLSQSPDETISVHVLDCKSANLGHLNW 2155

  Fly  3867 PKISLIVDTVT--KKEVKLDCAIEDDLVLPATGQIKDNKNNTLVPFDVGVQQCLLKTDNVTWSLP 3929
            |...|::..||  ...|.:|                  :.|..|..|          ..|.|  |
Mouse  2156 PPFCLVILNVTHLAHHVSID------------------RFNRKVTVD----------SQVVW--P 2190

  Fly  3930 ELLQREYYTPSTGKVLNPVTGEEILLQQAIEMGFVELETTLV-KDVDHD--KILPGKEAAKVGLL 3991
            .:.:..:....||.:....|...|.:|.....|.:.||.:.| |...|.  .|..|..|..:.|.
Mouse  2191 PMSRYGFRIEDTGHMYIVRTPSHIQIQWLHSSGLMILEASKVSKTQGHGLCGICDGDAANDLTLK 2255

  Fly  3992 D-TVRGTLSSPNISLDEAFVKGYLISTKK------PLSLVDC--LLRGLYDPSTAKFTIDDKQLD 4047
            | :|.|....|...||...|...|.|..:      ..:..||  .||.:   |...|        
Mouse  2256 DGSVLGEAEDPAPFLDSWQVPSSLTSEGQTRFRPDSCATADCSPCLRMV---SNRTF-------- 2309

  Fly  4048 LKAAIAQKLINPE---ELVLLDPK--TESIISITEAIAKGYLDPI----EGYVINPYASTKLSLH 4103
               :.....::||   ||.:.|.|  .:..:::|..:|..:...:    .|....|:..:..|.:
Mouse  2310 ---SACHSFVSPESFCELWIRDTKYVQQPCVALTVYVAMCHKFHVCIEWRGSDYCPFLCSSDSTY 2371

  Fly  4104 EALENRILIPPKRKRSLPDAVYRGLYDPKTGQFSNTVTREKLTTERAIRRGILDPDSTVVNVGSG 4168
            :|..  ....|      ||....|:..|                        |||:...| :|.|
Mouse  2372 QACV--AACEP------PDTCQDGILGP------------------------LDPEQCQV-LGEG 2403

  Fly  4169 QIIPFGVATETGIVDSKHGTVRDADD 4194
                 .|.||..|:..:|..:...:|
Mouse  2404 -----CVCTEGTILHRRHSALCIPED 2424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401
CH 223..327 CDD:306753
SPEC 471..689 CDD:238103
SPEC 690..866 CDD:238103
SH3 885..922 CDD:327375
SPEC 1047..1250 CDD:238103
SPEC 1153..1390 CDD:238103
PLEC <1498..1526 CDD:197605
Plectin 1949..1981 CDD:307019
DNA_pol3_delta2 <2711..3178 CDD:331068 31/147 (21%)
DUF4775 3026..3357 CDD:330579 73/352 (21%)
SMC_N <4904..5566 CDD:330553
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:321951
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:332967
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
EF-hand_7 8373..8437 CDD:316058
GAS2 8450..8522 CDD:128539
Herpes_ICP4_C 8550..>8795 CDD:332854
OtogXP_017177514.1 VWD 145..292 CDD:365869
C8 343..405 CDD:370094
TIL 420..467 CDD:366828
VWC 469..>504 CDD:327433
VWD 507..659 CDD:365869
C8 706..765 CDD:370094
TIL 773..837 CDD:366828
TIL 877..939 CDD:366828
VWD 970..1124 CDD:214566
C8 1159..1233 CDD:214843
Fascin <1298..1389 CDD:390083
PHA03247 <1459..1974 CDD:223021 137/669 (20%)
VWD 2104..2256 CDD:365869 35/181 (19%)
C8 2294..2362 CDD:214843 15/81 (19%)
TIL 2365..2426 CDD:366828 19/98 (19%)
CT 2834..2916 CDD:214482
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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