DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shot and Nefm

DIOPT Version :9

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:NP_032717.2 Gene:Nefm / 18040 MGIID:97314 Length:848 Species:Mus musculus


Alignment Length:1107 Identity:199/1107 - (17%)
Similarity:359/1107 - (32%) Gaps:374/1107 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  2527 IDSEQTNHILMP-LAKSLSVPRLADQGLIDPQTQTIVHPESG--YPLS-IHEAIVCEVLDPH--- 2584
            :.|......|.| ||.|.::...|:..|...|:.::::..||  |.|| .:|....:.|:..   
Mouse    48 VSSSYKRSALAPRLAYSSAMLSSAESSLDFSQSSSLLNGGSGGDYKLSRSNEKEQLQGLNDRFAG 112

  Fly  2585 --SKLHKPEKCTLEEAITKGIINADDSTFNYKNKTLNITEAIEAKLFDPSYDQ------------ 2635
              .|:|..|:...|       |.|:......|       :|..|:|.| :|||            
Mouse   113 YIEKVHYLEQQNKE-------IEAEIQALRQK-------QASHAQLGD-AYDQEIRELRATLEMV 162

  Fly  2636 --QKSKVEIPPVGMIFPVAVEKSLVEPSKRVVLHPSTKKAL-PIKQAIEENFIMSIPYSPKPDAI 2697
              :|::|::....:...:...|...|...|  |...|:.|: .:::.|||:.::.:....|..::
Mouse   163 NHEKAQVQLDSDHLEEDIHRLKERFEEEAR--LRDDTEAAIRALRKDIEESSMVKVELDKKVQSL 225

  Fly  2698 EVVTAM-----EQDLIDVAAQTLTVPSTGERIPLRQAMENGVLVVKNLSDFVITQKPIPKTEIME 2757
            :...|.     |:::.|:.||.             ||           |...:.:|...||:|..
Mouse   226 QDEVAFLRSNHEEEVADLLAQI-------------QA-----------SHITVERKDYLKTDIST 266

  Fly  2758 TVRAVHTVTTKTIELMQGYVLISNNEVQNVNTGE------VCSLEEAKELGILREESTTRETKAA 2816
            .::.:.:             .:..:..||::..|      ...|.||.|           :.|.|
Mouse   267 ALKEIRS-------------QLECHSDQNMHQAEEWFKCRYAKLTEAAE-----------QNKEA 307

  Fly  2817 AGESPESVGDVGTSGDQTVIVEERTQTVVVSSDTRKQEMQVVSTTQSTKDTSVPSVSEIETKGSK 2881
            ...:.|.:.:.                        ::::|                         
Mouse   308 IRSAKEEIAEY------------------------RRQLQ------------------------- 323

  Fly  2882 EPSKTLQNVKDAAKLGALGVIAAPVLAGGAIVSGVKSLIKSVKSPTEDAKSTEKPKEPQTSFIEQ 2946
              ||:::                                      .|..:.|::..|.|.|.||:
Mouse   324 --SKSIE--------------------------------------LESVRGTKESLERQLSDIEE 348

  Fly  2947 ERRKELQPQQVPSEVDNLLSETENFISSTTANFIANEKQQDKPDTLPQESNLPLEVESTSTLTTT 3011
            ....:|      |...:.:.:.||.:..|......:.::..  |.|..:..|.:|:.:...|...
Mouse   349 RHNHDL------SSYQDTIQQLENELRGTKWEMARHLREYQ--DLLNVKMALDIEIAAYRKLLEG 405

  Fly  3012 TVTTITTSSTTTETGNL----EPVVVEDVSTTVKEDKV--------------VVKPSTVPEDKTE 3058
            ..|..:|.|.:. ||.|    :|.|.  :|:.:::.||              :::.:.|.::|:|
Mouse   406 EETRFSTFSGSI-TGPLYTHRQPSVT--ISSKIQKTKVEAPKLKVQHKFVEEIIEETKVEDEKSE 467

  Fly  3059 VSKITETITTVTSNETDTVPEKISQKSASEE--SAKKDPVVTKDTSSRPAETETSPKPVQKEPTP 3121
            :.   ||:|.:......:..|:..:....||  .|:|.||.:.:......|.|      ::|...
Mouse   468 ME---ETLTAIAEELAASAKEEKEEAEEKEEEPEAEKSPVKSPEAKEEEEEGE------KEEEEE 523

  Fly  3122 DPAQNTEFPESIKKDPTPEPDYKETATEAAQITPKEASPAPTNKNEQSAEPTSKPE-----PMPR 3181
            ...:..|..|.:|.|...|...::..:.......:|.....|....:..|..:|.|     .:..
Mouse   524 GQEEEEEEDEGVKSDQAEEGGSEKEGSSEKDEGEQEEEEGETEAEGEGEEAEAKEEKKIEGKVEE 588

  Fly  3182 TAKKEEISEIEPPFTA----PLAPFVDQLAETKITEIKTEFKEPVTSSQTITTITTTVKTVDEHP 3242
            .|.|||| ::|.|..|    |.:|..:...:.:....|.|.||                   |..
Mouse   589 VAVKEEI-KVEKPEKAKSPMPKSPVEEVKPKPEAKAGKGEHKE-------------------EEK 633

  Fly  3243 IVEEVDEVS----KSEKIVDVEEPTVHQQEPIKVNETSDDSTRTEPTNEIVHEERVVTVEEPTIT 3303
            :.||..||:    |.||:...||         |..:.:|......|..|...|| |:|:.:    
Mouse   634 VEEEKKEVTKESPKEEKVEKKEE---------KPKDVADKKKAESPVKEKAVEE-VITISK---- 684

  Fly  3304 ETTVTTTTITTTTTSSSEETLPQENTATVKETPLNEPVPSSPAETKEIEQTTNDDQKKPEEIVDT 3368
                 :..::....:..|:..|||.   |||                          |.||...:
Mouse   685 -----SVKVSLEKDTKEEKLQPQEK---VKE--------------------------KAEEEGGS 715

  Fly  3369 EKKTTEQKPVETIPTEPISTSETTTVTLTTKTTIVDEGKLHPPSDIEQIIQPHSTSDKHQSLVDF 3433
            |::.:::.|.|                 :.|..|...|::....:.||     .|.:|....   
Mouse   716 EEEGSDRSPQE-----------------SKKEDIAINGEVEGKEEEEQ-----ETQEKGSGR--- 755

  Fly  3434 IEQEKGTQPAEGGSNILQNVKDAAKLGALAIVGAPVLAGKALVDALTTEKTLKPEHSTSQVVTET 3498
             |:|||         ::.|..|.:.                     ..||..:.......|||:.
Mouse   756 -EEEKG---------VVTNGLDVSP---------------------AEEKKGEDSSDDKVVVTKK 789

  Fly  3499 VEELPTEIITTSTATLVTKVTTTTTTTTTSTSEGTPDDEALDVVKLPAELVESSVKREVPRTLAI 3563
            ||:     ||:......||..|.:.|.|....|   .:|..:...:..:.||......:.:.:..
Mouse   790 VEK-----ITSEGGDGATKYITKSVTVTQKVEE---HEETFEEKLVSTKKVEKVTSHAIVKEVTQ 846

  Fly  3564 GD 3565
            ||
Mouse   847 GD 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401
CH 223..327 CDD:306753
SPEC 471..689 CDD:238103
SPEC 690..866 CDD:238103
SH3 885..922 CDD:327375
SPEC 1047..1250 CDD:238103
SPEC 1153..1390 CDD:238103
PLEC <1498..1526 CDD:197605
Plectin 1949..1981 CDD:307019
DNA_pol3_delta2 <2711..3178 CDD:331068 76/497 (15%)
DUF4775 3026..3357 CDD:330579 72/363 (20%)
SMC_N <4904..5566 CDD:330553
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:321951
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:332967
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
EF-hand_7 8373..8437 CDD:316058
GAS2 8450..8522 CDD:128539
Herpes_ICP4_C 8550..>8795 CDD:332854
NefmNP_032717.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..51 0/2 (0%)
Head 2..102 15/53 (28%)
Filament_head 10..97 CDD:282575 14/48 (29%)
Filament 98..409 CDD:278467 70/472 (15%)
Coil 1A 103..134 7/37 (19%)
Linker 1 135..147 5/19 (26%)
Coil 1B 148..246 18/99 (18%)
Linker 12 247..263 5/39 (13%)
Coil 2A 264..285 3/33 (9%)
Linker 2 286..289 1/2 (50%)
Coil 2B 290..410 28/227 (12%)
Tail 411..848 112/580 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 482..785 80/432 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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