DRSC/TRiP Functional Genomics Resources

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Protein Alignment shot and smtna

DIOPT Version :10

Sequence 1:NP_725339.1 Gene:shot / 36542 FlyBaseID:FBgn0013733 Length:8805 Species:Drosophila melanogaster
Sequence 2:XP_073770530.1 Gene:smtna / 100333230 ZFINID:ZDB-GENE-091204-245 Length:293 Species:Danio rerio


Alignment Length:211 Identity:57/211 - (27%)
Similarity:85/211 - (40%) Gaps:34/211 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 QQVTRNKRISTEVLGSSVESTKTSQRAPNG--------HRRVTTHIVRKVTTLSRAEENAQPAED 178
            ::..|.:.:.....|.:..|....|:|.||        ||......:.:.|::|..:..:.||:.
Zfish    92 ERAARMENLRQGTGGKTSASLSKDQKASNGPGGAQFNAHRTAQAKTLSQPTSVSSPKTVSSPAQS 156

  Fly   179 LLPPAKMIRSSELEYRRALPPAIESSSTQRREISDIVVGKEDNVSAREALLRWARRSTARYPGVR 243
            .:...||...|                         .||..:....::.||.|.|..|..|.||.
Zfish   157 HVARVKMSGGS-------------------------AVGGPNTKDVKQMLLDWCRVKTEPYEGVN 196

  Fly   244 VNDFTSSWRDGLAFSALVHRNRPDLLDWRKARNDRPRERLETAFHIVEKEYGVTRLLDPED-VDT 307
            :.:|:|||.|||||.|||||..|:..::........:...|.||...|:......|||.:| :..
Zfish   197 IQNFSSSWADGLAFCALVHRFFPEGFEYCTLNPYDRKSNFEKAFKTAERLADCPPLLDVDDLMRM 261

  Fly   308 NEPDEKSLITYISSLY 323
            .|||.|.:.|||...|
Zfish   262 REPDWKCVYTYIQEFY 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shotNP_725339.1 SAC6 204..>420 CDD:227401 41/121 (34%)
CH_PLEC-like_rpt2 223..327 CDD:409038 39/102 (38%)
SPEC 471..689 CDD:238103
SPEC 690..866 CDD:238103
SH3_10 864..929 CDD:407754
SPEC 1047..1250 CDD:238103
SPEC 1153..1390 CDD:238103
PLEC <1498..1526 CDD:197605
Plectin 1949..1980 CDD:459901
DUF5585 2860..>3198 CDD:465521
SMC_prok_B <4936..>5564 CDD:274008
SPEC 5304..5513 CDD:238103
SPEC <5658..5787 CDD:413338
SPEC 5793..6007 CDD:238103
SPEC 6011..6220 CDD:238103
SPEC 6118..6330 CDD:238103
PRK09039 <6279..6441 CDD:181619
SPEC 6443..6660 CDD:238103
SPEC 6663..6878 CDD:238103
SPEC 6880..7087 CDD:238103
SPEC 6986..7196 CDD:238103
SPEC 7196..7417 CDD:238103
SPEC 7314..7526 CDD:238103
SPEC 7528..7747 CDD:238103
SPEC 7749..7968 CDD:238103
SPEC 7973..8181 CDD:238103
FRQ1 <8375..8444 CDD:444056
GAS2 8450..8522 CDD:128539
PHA03307 8550..>8795 CDD:223039
smtnaXP_073770530.1 None
Blue background indicates that the domain is not in the aligned region.

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