DRSC/TRiP Functional Genomics Resources

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Protein Alignment Uba3 and Uba3

DIOPT Version :9

Sequence 1:NP_610913.1 Gene:Uba3 / 36539 FlyBaseID:FBgn0263697 Length:450 Species:Drosophila melanogaster
Sequence 2:NP_476553.1 Gene:Uba3 / 117553 RGDID:621084 Length:462 Species:Rattus norvegicus


Alignment Length:429 Identity:274/429 - (63%)
Similarity:343/429 - (79%) Gaps:6/429 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RFNGLRNILEREGPFCKDGFAASSENLEFLQTKCQVLIIGAGGLGCELLKDLALMGFGNLHVIDM 80
            |:|.::..|||.|||....|..|:|:|:||...|:||:||||||||||||:|||.||..:|||||
  Rat    37 RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM 101

  Fly    81 DTIELSNLNRQFLFRRTDIGASKAECAARFINARVPTCRVTPHFKKIQDFDESFYQQFHLVVCGL 145
            |||::||||||||||..|:|..|||.||.|:|.|||.|.|.|||.|||||:::||:|||::||||
  Rat   102 DTIDVSNLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGL 166

  Fly   146 DSIVARRWINGMLLSMLRYEEDGTIDTSSIVPMIDGGTEGFKGNARVILPGFTACIECTLDLFPP 210
            |||:|||||||||:|:|.| |||.:|.|||||:||||||||||||||||||.||||||||:|:||
  Rat   167 DSIIARRWINGMLISLLNY-EDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 230

  Fly   211 QVNYPLCTIANTPRLPEHCIEYVKIIQWEKQNPF--GVPLDGDDPQHIGWIYERALERSNEFNIT 273
            |||:|:||||:.|||||||||||:::||.|:.||  |||||||||:||.||:::::||::::||.
  Rat   231 QVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGDGVPLDGDDPEHIQWIFQKSVERASQYNIR 295

  Fly   274 GVTYRLVQGVVKHIIPAVASTNAAIAAACALEVFKLATSCYDSMANYLNFNDLDGIYTYTYEAEK 338
            ||||||.|||||.||||||||||.|||.||.||||:|||.|..:.|||.|||:||:||||:|||:
  Rat   296 GVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAER 360

  Fly   339 SENCLACSNTPQPLPIEDPNTTTLEDVIKLLCDSPRFQLKSPALTTVMKDGKRRTLYMSGVKSIE 403
            .|||.|||..||  .|:...:..|::|:..|.:|...|:||||:|..: :||.||||:..|.|||
  Rat   361 KENCPACSQLPQ--NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATL-EGKNRTLYLQSVTSIE 422

  Fly   404 EATRKNLTQSLGELGLHDGQQLTVTDATSPSAMTLQLKY 442
            |.||.||:::|.||||.|||:|.|.|.|:|..:..:|.:
  Rat   423 ERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHF 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Uba3NP_610913.1 ThiF 48..>220 CDD:279270 128/171 (75%)
Uba3_RUB 50..346 CDD:238765 215/297 (72%)
E2_bind 357..442 CDD:285976 39/84 (46%)
Uba3NP_476553.1 Interaction with UBE2M N-terminus. /evidence=ECO:0000250 53..70 6/16 (38%)
Uba3_RUB 71..368 CDD:238765 216/298 (72%)
Interaction with UBE2M N-terminus. /evidence=ECO:0000250 157..161 2/3 (67%)
Interaction with UBE2M N-terminus. /evidence=ECO:0000250 192..217 22/24 (92%)
Interaction with NEDD8. /evidence=ECO:0000250 227..229 0/1 (0%)
Interaction with NAE1. /evidence=ECO:0000250 242..248 3/5 (60%)
Interaction with NAE1. /evidence=ECO:0000250 292..295 2/2 (100%)
Interaction with UBE2M N-terminus. /evidence=ECO:0000250 331..338 4/6 (67%)
Interaction with NEDD8. /evidence=ECO:0000250 352..357 3/4 (75%)
Interaction with UBE2M core domain. /evidence=ECO:0000250 368..462 41/93 (44%)
E2_bind 376..461 CDD:400951 38/84 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353829
Domainoid 1 1.000 467 1.000 Domainoid score I442
eggNOG 1 0.900 - - E1_COG0476
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2951
Inparanoid 1 1.050 571 1.000 Inparanoid score I1019
OMA 1 1.010 - - QHG54659
OrthoDB 1 1.010 - - D256073at33208
OrthoFinder 1 1.000 - - FOG0005107
OrthoInspector 1 1.000 - - oto98894
orthoMCL 1 0.900 - - OOG6_101845
Panther 1 1.100 - - LDO PTHR10953
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3628
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.770

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