DRSC/TRiP Functional Genomics Resources

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Protein Alignment tum and RGD1

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_009819.1 Gene:RGD1 / 852563 SGDID:S000000464 Length:666 Species:Saccharomyces cerevisiae


Alignment Length:689 Identity:145/689 - (21%)
Similarity:249/689 - (36%) Gaps:197/689 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MALSALASFDDLRRCMQVLTDGTPEEEFLRFLRMFEQYHEKCAGYAAETARIQNELDKSLTKMGD 65
            :|::||.|    |....:||.    |||::|:|         ..||.|...:| ||.|......:
Yeast    43 VAINALLS----RLKQSLLTC----EEFMKFIR---------KKYAFEEEHVQ-ELSKQYKHFFN 89

  Fly    66 LEG-------KLFHARRIIDMEIKARRQAEHERDAMESKIMAVADLLRHERNLNNETRDKLAFLH 123
            ::|       |:.|  .::..:.|..:..:....|::.....::.||                  
Yeast    90 IQGSTNSSLKKMIH--EVLGFDGKMAQVKQSYITALQKMYSEISSLL------------------ 134

  Fly   124 TLPSSRKRKSL--NAVREDKSYGD-INST-------GSLLSD---LSITHSEDDFLDVRTSKSWR 175
             |..::.|||:  |:.|.:|...| |:|.       .||..|   |.:|......|.:|.||:.:
Yeast   135 -LTMTKLRKSVKENSKRLEKDVSDAIHSAEKAQSRYNSLCQDWDKLRMTDPTKTKLTLRGSKTTK 198

  Fly   176 EHRPSLPKNQIPSVGNK--RSRLSTGLNGSMSGTTPTTGKSR------------RSSVGIGVEQH 226
            |....|    :..:.|.  ..:.....:.|:..|..|..:.|            .:::.|.::::
Yeast   199 EQEEEL----LRKIDNADLEYKQKVDHSNSLRNTFITKERPRIVQELKDLILEIDTAMTIQLQKY 259

  Fly   227 TVDVGQGAERFCATTKVTI-PQDGQGVIRAESTIESLPVIAG---NER----------------- 270
            |:    ..|.....|.||| |.|         :.:|:...||   |||                 
Yeast   260 TI----WTENLVLNTGVTISPLD---------STKSMKSFAGSVSNERDLYSFLNKYNQTGKHSL 311

  Fly   271 ------------------------------IGDGLSSTPRRSVLKEATAPPLTPVN--AMAPHVV 303
                                          :....:|.|:|.:.....:|.|:..:  |..|:..
Yeast   312 LINKNLIPVSYKKHPSMNHGQKNKSPPKFAVDPSRNSIPKRMISTHNESPFLSSSSNTAAVPNAN 376

  Fly   304 AESGTP-----LQHRPLMRNHTFS-----------------------QKTFLRGDNCVQCQKRIR 340
            ..|.||     .|..|.|.:...|                       .||...|:|..|..:.: 
Yeast   377 LNSATPSLNTNKQLPPTMASSISSTSNAAGAMSPSSSIVTSDTTSSITKTLDPGNNSPQIPEEL- 440

  Fly   341 FGAVGLRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTKTMTGYVTDFAPSIAPMIPALIVHCVNEI 405
               :.....|.|: .||.     |.:.:|.......||....:.........|:||::..|:..|
Yeast   441 ---INSLDSDRPI-SHIQ-----TNNNMPPGVQKNFKTFGVPLESLIEFEQDMVPAIVRQCIYVI 496

  Fly   406 EARGLTEVGLYRLSSSEREYKALKEQFLRGKAT--------PHLGNTDIYVLCCCVKDFLRSLTE 462
            :..||.:.|:||.|::..:...|||:..:..|.        || .::|||::...:|.|..||.:
Yeast   497 DKFGLDQEGIYRKSANVLDVSKLKEEIDKDPANISMILPSKPH-SDSDIYLVGSLLKTFFASLPD 560

  Fly   463 PLIPTSQWKDFANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAFLILHFQRI-AQCPVVLMPIDN 526
            .::|.:...:....:|..|..|.::.:...:..||.|...||..|:.|.:|: |......|.:..
Yeast   561 SVLPKALSSEIKVCLQIEDPTTRKNFMHGLIYNLPDAQYWTLRALVFHLKRVLAHEAQNRMNLRA 625

  Fly   527 ISLIFGPTIVGYSTPDPDQHAIYTEVFTQKQVMKALLEL 565
            :.:|:||||   :..:||.   ..:|..|...|:.|||:
Yeast   626 LCIIWGPTI---APANPDD---ANDVNFQIMAMEVLLEV 658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 11/70 (16%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 51/194 (26%)
RGD1NP_009819.1 F-BAR_Rgd1 39..268 CDD:153336 55/271 (20%)
RhoGAP_fRGD1 470..663 CDD:239863 51/196 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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