DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and LRG1

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_010041.2 Gene:LRG1 / 851358 SGDID:S000002399 Length:1017 Species:Saccharomyces cerevisiae


Alignment Length:541 Identity:101/541 - (18%)
Similarity:189/541 - (34%) Gaps:165/541 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 QNELDKSLTKMGDLEGKLFHARRIIDME-IKARRQA----EHERDAMESKIMAVADLLRHERNLN 112
            :|.|..::.|      :..:.|.:.|:: :::||::    .:::.|.:|.|:..|     |.:||
Yeast   520 RNSLQSTMLK------EQTYIRTLNDIKRLRSRRESVRVTHNKQQARKSVILETA-----ETDLN 573

  Fly   113 NETRDKLAFLHTLPSSRKRKSLNAVREDKSYGDINSTGSLLSDLSITHSEDDFLDVRTSKSWREH 177
            :.|:           ....|:|....:|.|.....||...:...:.|.:.||...:..::..||.
Yeast   574 DPTK-----------QGDSKNLVIQTDDPSSSQQVSTRENVFSNTKTLTLDDISRIVAAEQAREL 627

  Fly   178 RPSLPKNQIPSVGNKRSRLSTGLNGSMSGTTPTTGKSRRSSVGIGVEQHTVDVGQGAERFCATTK 242
            ||:       :..:.:....|  :...|...|     ::|.|... |..|:::            
Yeast   628 RPN-------AFAHFKKLKET--DDETSNVVP-----KKSGVYYS-ELSTMEL------------ 665

  Fly   243 VTIPQDGQGVIRAESTIESLPVIAGNERIGDGLSSTPRRSVLKEATAPPLTPVNAMAPHVVAESG 307
                    .:|||    .||.::||.:.|              ..|.|..|.:.:|         
Yeast   666 --------SMIRA----ISLSLLAGKQLI--------------SKTDPNYTSLVSM--------- 695

  Fly   308 TPLQHRPLMRNHTFSQKTFLRGD--NCVQCQKRIRFGAVGLRCRDCPVRCHIDCRYLLTVSCVPQ 370
                        .||.:..:.|.  |                            |..:.:|..|:
Yeast   696 ------------VFSNEKQVTGSFWN----------------------------RMKIMMSMEPK 720

  Fly   371 TGTPTTKTMTG---------YVTDFAPSIAPM---IPALIVHCVNEIEARGLTEVGLYRLSSSER 423
              .|.|||:.|         :..|....:.|:   ||.:|...::.:....::..|::|.:.:.|
Yeast   721 --KPITKTVFGAPLDVLCEKWGVDSDLGVGPVKIRIPIIIDELISSLRQMDMSVEGIFRKNGNIR 783

  Fly   424 EYKALKEQF-LRGKATPHLGNTDIYVLCCCVKDFLRSLTEPLIPTSQWKDFANA--VQNPDTKTA 485
            ..:.|.... ......|.....:...|...:|.|:|.|.:|::.|..::.:..|  :...|.|..
Yeast   784 RLRELTANIDSNPTEAPDFSKENAIQLSALLKKFIRELPQPILSTDLYELWIKAAKIDLEDEKQR 848

  Fly   486 QDMLVKSVKQLPQANRDTLAFLI--LH----FQRIAQCPVVLMPIDNISLIFGPTIV-------- 536
            ..:|:.|:  ||..||:.|..|:  ||    |..|.......|.|.|:|.:..|.|:        
Yeast   849 VILLIYSL--LPTYNRNLLEALLSFLHWTSSFSYIENEMGSKMDIHNLSTVITPNILYLRHKEIS 911

  Fly   537 GYSTPDPDQHAIYTEVFTQKQ 557
            ..:.||..:..: .:.|.|.:
Yeast   912 NDNVPDEPESGL-VDSFAQNK 931

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 5/49 (10%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 43/206 (21%)
LRG1NP_010041.2 LIM1_Lrg1p_like 28..90 CDD:188777
LIM 98..149 CDD:259829
LIM3_Lrg1p_like 419..475 CDD:188779
RhoGAP_fLRG1 728..959 CDD:239862 43/207 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.