DRSC/TRiP Functional Genomics Resources

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Protein Alignment tum and Gmip

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_030099716.1 Gene:Gmip / 78816 MGIID:1926066 Length:1002 Species:Mus musculus


Alignment Length:446 Identity:113/446 - (25%)
Similarity:181/446 - (40%) Gaps:100/446 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 TPTTGKSRRSSVGI-GVEQHTVD-VGQGAERFCATTKVTIPQDG-QGVIRAESTIESLPVIAGNE 269
            :|..|....:|:|. |:....|| ||.|:|.....:..:.|..| :.:::|.||        |.|
Mouse   413 SPEPGPWEVASLGSQGIPGSDVDSVGGGSESRSLDSPTSSPGAGARRLVKASST--------GTE 469

  Fly   270 R----------IGDGLSS---TP-RRSVLKEATAPPLTPVNAMAPHVVAESGTPLQHRPLMRNHT 320
            .          :|||:.:   :| |:..|..|..                     .|| |.|   
Mouse   470 SSDDFEERDPDLGDGIENGVGSPFRKWTLSTAAQ---------------------THR-LRR--- 509

  Fly   321 FSQKTFLRGD-NCVQCQKRIRFGAVGLRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTKTMTGYVT 384
                  |||. .|.:|:   .|...|..|.:|.:.||..|...|.:.| .....|...::.|  .
Mouse   510 ------LRGPAKCRECE---AFMVSGTECEECFLTCHKRCLETLLILC-GHRRLPARMSLFG--V 562

  Fly   385 DF--APSIAP-MIPALIVHCVNEIEARGLTEVGLYRLSSSEREYKALKEQFLRGKATPHLGNTDI 446
            ||  .|...| .:|.:|..|..|||.|.|...|:||:|.|....:.|.:.|..|:|...|.....
Mouse   563 DFLQLPRDFPEEVPFVITRCTAEIEHRALGLQGIYRVSGSRVRVERLCQAFENGRALVELSGNSP 627

  Fly   447 YVLCCCVKDFLRSLTEPLIPTSQWKDF--------ANAVQNPDTKTAQDMLVKSVK----QLPQA 499
            :.:...:|.||:.||:|::|...:..|        |:...:|.|......:::|:|    |||.:
Mouse   628 HDITSVLKRFLQELTDPVVPFHLYDAFISLAKTLHADPGDDPGTPNPSPEIIRSLKTLLVQLPDS 692

  Fly   500 NRDTLAFLILHFQRI-AQCPVVLMPIDNISLIFGPTIVGYSTPDPDQH------AIYTEVFTQKQ 557
            |..||..|:.|..|: |:.....|..:|:.::||||::  ..||..:.      |...:...|.|
Mouse   693 NYSTLRHLVAHLFRVAARFEENKMSANNLGIVFGPTLL--RPPDGPRATGASPVACLLDSGHQAQ 755

  Fly   558 VMKALL----------ELPVSFWEQYIVIDPTRTPATVIKRVPSNKNDLLSLYATP 603
            :::.|:          |||::  .:.:..||...|| .::..|.:...||:....|
Mouse   756 LVEFLIVHYEQIFGMDELPLA--SEPLTQDPGLAPA-CLESSPQHPASLLAQDTQP 808

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 13/48 (27%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 61/220 (28%)
GmipXP_030099716.1 BAR 124..324 CDD:386243
C1 503..548 CDD:197519 17/78 (22%)
RhoGAP 560..763 CDD:383032 58/206 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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