DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and ophn1

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001072480.1 Gene:ophn1 / 779935 XenbaseID:XB-GENE-1009725 Length:792 Species:Xenopus tropicalis


Alignment Length:639 Identity:122/639 - (19%)
Similarity:201/639 - (31%) Gaps:225/639 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 GTPEEEFLRFLRMFEQYH---EKCAGYAAETARIQ-NELDKSL--TKMGDLEGKLFHARRIIDME 80
            |..:|...:|.:..|:|:   ::....:::...:| ||.|:.:  .|....|..|.:..:|.:::
 Frog   125 GLTKERKKKFDKDGEKYYSLLDRHVNLSSKKKEVQLNEADQQVDREKQNFYESSLEYVYQIQEVQ 189

  Fly    81 IKARRQAEHERDAMESKIMAVADLLRHERNLNNE-TRDKLAFLHTLPSS--RKRKSLNAVRED-- 140
                   |.::..:...::.....|....||..| |:|.|.:...|..|  ..|...::.||:  
 Frog   190 -------ESKKFCIVEPVLTFLHCLFTSNNLTFELTQDFLPYKQQLQLSLQNTRNHFSSTREELE 247

  Fly   141 -------------KSYGDINSTGSLLSD----LSITHSEDDFLDVRTSKSWREH----------R 178
                         |..|.....|.|.|.    |.||              |.:|          .
 Frog   248 DLKKRMTEAPMMCKLRGQSTIEGYLYSQEKRALGIT--------------WVKHYCKYEKEGKVL 298

  Fly   179 PSLPKNQIPSVGNKRSRLSTGLNGSMSGTTPTTGKS--RRSSVGIGVEQHTVDVGQGAERFCATT 241
            ..:|..|.|              ||..|....|.||  ||.|..|.            :|||...
 Frog   299 SMMPLEQKP--------------GSRQGNQELTLKSCIRRKSDSID------------KRFCFDV 337

  Fly   242 KVTIPQDGQGVIRAESTIESLPVIAGNERIG----DGLSSTPRRSVLKEATAPPLTPVNAMAPHV 302
            :.                        |||.|    ..||.|.||           ..:.||    
 Frog   338 ET------------------------NERPGTLTLQALSETNRR-----------LWIEAM---- 363

  Fly   303 VAESGTPLQHRPLMRNHTFSQKTFLRGDNCVQCQKRIRFGAVGLRCRDCPVRCHIDCRYLLTVSC 367
              :...|:.|.|:.:                  :..:....||.|                    
 Frog   364 --DGKEPIYHSPITK------------------RDEMELNEVGFR-------------------- 388

  Fly   368 VPQTGTPTTKTMTGYVTDFAPSIAPMIPALIVHCVNEIEARGLTEVGLYRLSSSEREYKALKEQF 432
                                         .:..|:|.:||.|:|..|:||...|..:.:.|...|
 Frog   389 -----------------------------FVRKCINAVEATGITSEGVYRTVGSNIQVQKLLNAF 424

  Fly   433 LRGKATPHLGNT-------DIYVLCCCVKDFLRSLTEPLIPTSQWKDFANAVQNPDTKTAQDMLV 490
            ...|..   ||.       ||..:...:|.:||:|:||::.....:|...|.::.:.......:.
 Frog   425 FDPKCP---GNVDLQNSEWDIKTITSSLKFYLRNLSEPVMTYKLHRDLVLASKSENLDYRLGAIH 486

  Fly   491 KSVKQLPQANRDTLAFLILHFQRIAQ-CPVVLMPIDNISLIFGPTIVGYSTPDPDQHAIYTEVFT 554
            ..|.:||:.:|:.|..:|.|..|:.: ....||...|:.:|||||::   ....|..|....:..
 Frog   487 CLVYRLPENHREMLELIIRHLSRVCEFSRENLMSPSNMGVIFGPTLM---RAQEDTVAAMMNIKF 548

  Fly   555 QKQVMKALLELPVSFWEQYI------------VIDPTRTPATVIKRVPSNKNDL 596
            |..|::.|:|.....:...:            :...|..|.|:.||....::.|
 Frog   549 QNIVVELLIENCKKIFSGPLDDNCGPPVPPPRITPRTHIPITISKRQARGRSGL 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 3/47 (6%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 47/196 (24%)
ophn1NP_001072480.1 BAR_OPHN1 19..225 CDD:153317 21/106 (20%)
BAR-PH_GRAF_family 267..370 CDD:269953 36/183 (20%)
RhoGAP 363..559 CDD:383032 53/274 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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