DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and arhgap18

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001072336.1 Gene:arhgap18 / 779789 XenbaseID:XB-GENE-988160 Length:662 Species:Xenopus tropicalis


Alignment Length:624 Identity:127/624 - (20%)
Similarity:203/624 - (32%) Gaps:198/624 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 DGTPEEEFLRFLRMFEQYHEKCAGYAAETARIQNELDKSLTKMGDLEGKLFHARRIIDMEIKARR 85
            :|..|||:|:...:...::| ||....|:..:.:.|.|:.:..         .::.||...:..|
 Frog   103 EGELEEEWLKEAGLSNLFNE-CAADPQESIVLLSTLTKTQSAA---------VQKRIDTVTQTLR 157

  Fly    86 QAEHERDAMESKIMAVADLLRHERNLNNETRDKLAFLHTLPSSRKRKSLN------AVREDKSYG 144
            :...:.     :|..|.|:.:...||.::..|...|..|..:..|.:..|      |....::.|
 Frog   158 KKNRQH-----QIPDVRDVFKQPVNLQDKAGDINGFQSTESNDPKNEEANEKAECVAPEASRNVG 217

  Fly   145 DINSTGSLLSDLSITHSED-----DFLDVRTSKSWREHRPSLPKNQIPSVGNKRSRLSTGLNGSM 204
            |.........:|.|:.:|.     ||..||..|   |....||..::                  
 Frog   218 DDLPVPVTDINLEISFAEQASNLKDFTRVRNEK---EDDSLLPNFRL------------------ 261

  Fly   205 SGTTPTTGKSRRSSVGIGVEQHTVDVGQGAERFCATTKV--TIPQDGQGVIRAESTIESLPVIAG 267
              |...||                           |||:  ..|||    ::..|::..:.:.|.
 Frog   262 --TQDKTG---------------------------TTKIGDLAPQD----MKKVSSLALIELTAL 293

  Fly   268 NERIGDGLSSTPRRSVLKEATAPPLTPVNAMAPHVVAESGTPLQHRPLMRNHTFSQKTFLRGDNC 332
            .:.:|..| ...|.:.:|                 |.|||  |...||        .|.|..|  
 Frog   294 YDVLGTEL-KMQRAAKIK-----------------VRESG--LFRVPL--------STLLDQD-- 328

  Fly   333 VQCQKRIRFGAVGLRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTKTMTGYVTDFAPSIAPMIPAL 397
               |||                                  .|.|:                :|.:
 Frog   329 ---QKR----------------------------------APGTR----------------VPLI 340

  Fly   398 IVHCVNEIEARGLTEVGLYRLSSSEREYKALKEQ----FLRGKATPHLGNTDIYVLCCCVKDFLR 458
            ....:..||..||...|:.|:..:....|||.|:    |..|  |.:..|...:.....:|.|:|
 Frog   341 FQSLIGHIEKGGLDTEGILRIPGASARIKALIEELEAKFYEG--TFNWDNVKQHDAASLLKFFIR 403

  Fly   459 SLTEPLIPTSQWKDFANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAFLILHFQRIA----QCPV 519
            .|..||:.....|.|.:....|..|.....|...|..||:.:||||..|:...||:.    |..:
 Frog   404 ELPLPLLTVEYLKAFHSVQYLPTKKHRLQALNLLVILLPEIHRDTLKALLEFLQRVVDHREQNKM 468

  Fly   520 VLMPIDNISLIFGPTIVG---YSTPDPDQHAI---YTEVFTQKQVMKALLELPVSFW--EQYIVI 576
            :|   .|:::|..|.:..   |.....||.|:   ::...| ..||..:::.....|  .::||.
 Frog   469 IL---KNVAMIMAPNLFSVHTYQLKTVDQGALEGAFSAART-ASVMLFMIKYQNLLWTIPKFIVA 529

  Fly   577 DPTRTPATVIKRVPSNKNDLLSLYATPFKGGTIKKRKFY 615
            ...|......|::...|         |.|  .:.||..|
 Frog   530 QVRRQNIVNQKKLSKEK---------PMK--KLLKRMAY 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 6/47 (13%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 48/202 (24%)
arhgap18NP_001072336.1 RhoGAP_ARHGAP18 316..532 CDD:239856 62/284 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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