DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and Arhgap12

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_006526377.1 Gene:Arhgap12 / 75415 MGIID:1922665 Length:843 Species:Mus musculus


Alignment Length:637 Identity:136/637 - (21%)
Similarity:231/637 - (36%) Gaps:217/637 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 EQYHEKC------------AGYAAE------TARIQNELDKSLTKMGDLEGKLFH-----ARRII 77
            |.||..|            .|::.|      |....:...:...|..|.:|:.::     :|.  
Mouse   319 ENYHSSCFSQSDSQCGSPPRGWSEELDERGHTLYTSDYTKEKWLKHVDDQGRQYYYSADGSRS-- 381

  Fly    78 DMEI-KARRQAEHERDAMESKIM-------AVADLLRH------ERNLNNETRDKLAFLHTLP-- 126
            :.|: |....::.:|:.::|:.:       .|....||      ..:.::.|..||.    ||  
Mouse   382 EWELPKYNASSQQQREIIKSRSLDRRLQEPIVLTKWRHSTIVLDSNDKDSPTTTKLC----LPEN 442

  Fly   127 -----SSRKRKSLNAVREDKSYGDINSTGSLLSDLSITHSEDDFLDVRTSKSWREHRPSLPKNQI 186
                 ||:.:....:::..:.||.:|.|       .||.:     ..:..|:|            
Mouse   443 ESPPTSSKHQDPAGSLKGQEKYGLLNVT-------KITEN-----GKKVRKNW------------ 483

  Fly   187 PSVGNKRSRLSTG--LNGSMSGTTPTTGKSRRSSVGIGVEQ----HTVDVGQGAERFCAT----- 240
                     ||:.  |.||....|.|.|.   |:...|..|    .|||: :||....|:     
Mouse   484 ---------LSSWAVLQGSSLLFTKTQGS---STSWFGSNQSKPEFTVDL-KGAVIEMASKDKSS 535

  Fly   241 ------------TKVTIPQDGQGVIRAESTIESLPVIAGNERIGDGLSSTPRRSVLKEATAPPLT 293
                        |::.|..|...||.....:               ||||....|.:...|    
Mouse   536 KKNVFELKTRQGTELLIQSDNDAVINDWFKV---------------LSSTINNQVAEADEA---- 581

  Fly   294 PVNAMAPHVVAESGTPLQHRPLMRNH--TFSQKTF-----LRG---DNCVQ--CQKRIRFGAVGL 346
                      ||..||  ..|.:..|  ...||..     ::|   |:..|  .:|.::      
Mouse   582 ----------AEEETP--DSPGVEKHDKEKDQKELKKLRSMKGSSMDSSEQKKTKKNLK------ 628

  Fly   347 RCRDCPVRCHIDCRYLLTVSCVPQTGTPTTKTM--TGYVTD--FAPSIAPM-------IPALIVH 400
                         ::|        |..||.:.:  .||:.|  |..::|.:       :|..:..
Mouse   629 -------------KFL--------TRRPTLQAVREKGYIKDQVFGSNLANLCQRENGTVPKFVKL 672

  Fly   401 CVNEIEARGLTEVGLYRLSSSEREYKALKEQFLRGKATPH-----LGNT---DIYVLCCCVKDFL 457
            |:..:|..||...|:||:|.:....:.|:      .|..|     |.::   ||:|:...:|.|.
Mouse   673 CIEHVEEHGLDVDGIYRVSGNLAVIQKLR------FAVNHDEKLDLNDSKWEDIHVITGALKMFF 731

  Fly   458 RSLTEPLIPTSQWKDFANAV-QNPDTK--TAQDMLVKSVKQLPQANRDTLAFLILHFQRIAQ-CP 518
            |.|.|||...:.:.||.||: |.|..:  ..:|:    ::|||:.|:||:..|..|.:|:.: ..
Mouse   732 RELPEPLFTFNHFNDFVNAIKQEPRQRVTAVKDL----IRQLPKPNQDTMQILFRHLKRVIENGE 792

  Fly   519 VVLMPIDNISLIFGPTIVGYSTPDPDQHAIYTEVFTQKQVMK-ALLELPVSF 569
            ...|...:|:::||||::   .|:.:...|......|.|::: .||||...|
Mouse   793 KNRMTYQSIAIVFGPTLL---KPERETGNIAVHTVYQNQIVELILLELSTVF 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 8/59 (14%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 59/211 (28%)
Arhgap12XP_006526377.1 SH3_ARHGAP12 13..72 CDD:213003
SH3-WW_linker 69..264 CDD:374675
PRP40 257..>409 CDD:227435 15/91 (16%)
WW 266..296 CDD:238122
PH_ARHGAP9-like 462..573 CDD:270053 34/162 (21%)
RhoGAP_ARHGAP27_15_12_9 651..836 CDD:239868 52/197 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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