DRSC/TRiP Functional Genomics Resources

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Protein Alignment tum and racgap1.2

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_031748578.1 Gene:racgap1.2 / 733574 XenbaseID:XB-GENE-5952945 Length:594 Species:Xenopus tropicalis


Alignment Length:658 Identity:188/658 - (28%)
Similarity:299/658 - (45%) Gaps:113/658 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ALASFDDLRRCMQVLT-DGTPEEEFLRFLRMFEQYHEKCAGYAAETARIQNELDKSLTKMGDLEG 68
            ||.|:  |.|.::.:. :.:.|:||::..|.||...:|......|....:..|.|...:...|:.
 Frog     8 ALQSY--LDRILKFIEFNVSAEDEFIQVARSFETSRKKLQQTEQELRDKRETLVKCEIERSALQV 70

  Fly    69 KLFHARRIIDMEIKARRQAEHERDAMESKIMAVADLLRHERNLNNETRDK-LAF-----LHTLPS 127
            ||.|||..:|:|:|.|::||.:.:..|.:|..:.|||:.:........|. ||:     :.|.|.
 Frog    71 KLKHARNQVDVEMKKRQRAETKLEKAERQIQLIGDLLKTDGQTAVPLSDSVLAYFGGSRVSTAPQ 135

  Fly   128 SRKRKSLNAVREDKSYGDINSTGSLLSDLSITHSEDDFLDVRTSKSWREHRPSLPKNQIPSVGNK 192
            :..:..|:.|.|        |..|.|||:|..|:||| ||                  :..:|.|
 Frog   136 TAGKSRLSVVDE--------SCTSFLSDISYDHTEDD-LD------------------LDELGGK 173

  Fly   193 RSRLSTGLNGSMSGTTPTTGKSRRSSVGIGVEQHTVDVGQGAERFCATTKVTIPQDGQGVIRAES 257
            .::|........|...|...:.|.|.....|.::.      .|...|.|.:.:...|        
 Frog   174 PTKLKARERRRSSLIAPLLKRPRPSEAAAIVAENV------RETVIANTALLVSDTG-------- 224

  Fly   258 TIESLPVIAGNERIGDGLSSTPRRSVLKEATAPPLTPVNAMAPHV--VAESGTPLQHRP---LMR 317
                 |..|        :.:.|||   :...:.||:.:....|.:  :.|....::..|   ..|
 Frog   225 -----PFSA--------VEAAPRR---RSRKSRPLSSLQDQTPALPQINEEEKEMEPEPPPYPTR 273

  Fly   318 NHTFSQKTFLRGDNCVQCQKRIRFGAVGLRCRDCPVRCHIDCRYLLTVSC---VPQTGTPTTKTM 379
            .|.:..:|.:|.:.|:.|.:::|||.:.|:|:||.:..|.:|:......|   :|...| ..|..
 Frog   274 THVYLSRTMIRAELCMVCGQKVRFGKMCLKCKDCRILIHPECKDFCPKVCSSALPSHST-NPKNG 337

  Fly   380 TGYVTDFAPSIAPMIPALIVHCVNEIEARGLTEVGLYRLSSSEREYKALKEQFLRGK-ATPHLGN 443
            .|.:.|:||:..|.:|:.:|.||||||.||.:|.|:||:...:|..|.||::.|:|| ...||..
 Frog   338 PGVLADYAPAAPPRVPSQVVQCVNEIEKRGFSERGIYRIPGCDRLVKELKQKLLQGKIKAQHLAK 402

  Fly   444 TDIYVLCCCVKDFLRSLTEPLIPTSQWKDFANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAFLI 508
            .|::.:|..:|:|.|:|.|||:..|....|.:|....|....:....::|..||..|||||||||
 Frog   403 EDVHTVCGALKEFFRTLQEPLLTYSLHATFLDAADILDECDGRAETCQAVHDLPAPNRDTLAFLI 467

  Fly   509 LHFQRIAQCPVVLMPIDNISLIFGPTIVGYSTPDPDQHAIYTEVFTQKQVMKALLELPVSFWEQY 573
            ||..|:.:.|...|...|:|.|||||:||||.|:|....|..:...|.:||..||.:|.:||:|:
 Frog   468 LHLYRVMRSPECKMDKTNLSRIFGPTLVGYSVPNPSPLMIMQDTPRQAKVMSMLLSIPCAFWDQF 532

  Fly   574 I------------------VIDPTRTP---ATVIKRVP-----SNKNDLLSLYATPFKGGTIKKR 612
            :                  :..|..:|   :.::|..|     |:|:||      |.|.|     
 Frog   533 LFTNQENKDGNSAKLDQERLFRPVTSPEINSGLLKASPYLTQSSSKSDL------PKKAG----- 586

  Fly   613 KFYGTPPA 620
            :|:.:|.|
 Frog   587 RFFTSPNA 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 14/47 (30%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 78/189 (41%)
racgap1.2XP_031748578.1 C1_MgcRacGAP 273..323 CDD:410371 15/49 (31%)
RhoGAP_MgcRacGAP 336..529 CDD:239847 78/192 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 140 1.000 Domainoid score I4716
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 301 1.000 Inparanoid score I2638
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D184774at33208
OrthoFinder 1 1.000 - - FOG0004815
OrthoInspector 1 1.000 - - otm48467
Panther 1 1.100 - - O PTHR46199
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3396
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.070

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