DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and Arhgap21

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_006497601.1 Gene:Arhgap21 / 71435 MGIID:1918685 Length:1957 Species:Mus musculus


Alignment Length:617 Identity:129/617 - (20%)
Similarity:223/617 - (36%) Gaps:167/617 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 RRQAEHERDAMESKIMAVADLLRHERN------LNNETRD-KLAFLHTLPSSRKRKSLNAVREDK 141
            |||..|:::::....:......:.||:      |::...| ||:|.|.       .||..::...
Mouse   858 RRQLSHDQESVGPPSLDGQHSSKTERSKSYDEGLDDYREDAKLSFKHV-------SSLKGIKITD 915

  Fly   142 SYGDINSTGSLLSDLSITHSEDDFLDVRTSKSWREHRPSLPKNQIPSVGNKRSRLSTGLNGS--- 203
            |......:||....     |.:.|.|. ..:.|.:.|        |.|.:|..|    :.||   
Mouse   916 SQKSSEDSGSRKGS-----SSEVFSDA-AREGWLQFR--------PLVTDKGKR----VGGSIRP 962

  Fly   204 -------MSGTTPTTGKSRRSSVGIGVEQHTVDVG----------------------------QG 233
                   :.|.:....|.||.......|:..:.|.                            |.
Mouse   963 WKQMYVVLRGHSLYLYKDRREQTTPSEEEQPISVNACLIDISYSETKRRNVFRLTTSDCECLFQA 1027

  Fly   234 AERFCATTKVTIPQDGQGVIRAESTIESLPVIAGNERI----------GDGLSSTPRRSV----- 283
            .:|....:.:...|:...:...::.:.:..:|  :.||          .:.|..|||:|:     
Mouse  1028 EDRDDMLSWIKTIQESSNLNEEDTGVTNRDLI--SRRIKEYNSLLSSKTEQLPKTPRQSLSIRQT 1090

  Fly   284 LKEATAPPLTPVNAMAPHVVAESGTPLQHRPLMRNHTFSQK---TFLRGDNCVQC----QKRIRF 341
            |..|.:.|.|    .:||...|..   :.:.|.::.|...|   |:.||...:..    :|....
Mouse  1091 LLGAKSEPKT----QSPHSPKEES---ERKLLSKDDTSPPKDKGTWRRGIPSIVRKTFEKKPAAT 1148

  Fly   342 GAVGLRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTKTMTGYVTDFAPSIAPMIPALIVHCVNEIE 406
            |..|:|..||| ..|.: ||                                ||.::..|...:|
Mouse  1149 GTFGVRLDDCP-PAHTN-RY--------------------------------IPLIVDICCKLVE 1179

  Fly   407 ARGLTEVGLYRLSSSEREYKALKEQFLRGKATPHLGN---TDIYVLCCCVKDFLRSLTEPLIPTS 468
            .|||...|:||:..:.....:::|:..:|.|...:.:   .|:.|:...:|.|.|.|.|||....
Mouse  1180 ERGLEYTGIYRVPGNNAAISSMQEELNKGMADIDIQDDKWRDLNVISSLLKSFFRKLPEPLFTND 1244

  Fly   469 QWKDFANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAFLILHFQRIAQ-CPVVLMPIDNISLIFG 532
            ::.||..|.:..|.......|.:.:..||:.:.:||.||..|.:.:|: .....|...|::::||
Mouse  1245 KYADFIEANRKEDPLDRLRTLKRLIHDLPEHHFETLKFLSAHLKTVAENSEKNKMEPRNLAIVFG 1309

  Fly   533 PTIVGYS--------TPDPDQHAIYTEV-------FTQKQVMKALLELPVSFWEQYIVIDPTRTP 582
            ||:|..|        |..|||:.|...:       ||::..     |.|::..::...:|....|
Mouse  1310 PTLVRTSEDNMTHMVTHMPDQYKIVETLIQHHDWFFTEEGA-----EEPLTAVQEENTVDSQPVP 1369

  Fly   583 -----ATVIKR---VPSNKNDLLSLYATPFKG 606
                 .|.|.|   :|.:.:|..:..:...||
Mouse  1370 NIDHLLTNIGRTGVLPGDVSDSATSDSAKSKG 1401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 15/54 (28%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 52/207 (25%)
Arhgap21XP_006497601.1 PDZ_signaling 55..162 CDD:238492
PH_ARHGAP21-like 938..1047 CDD:269955 17/120 (14%)
RhoGAP_ARHGAP21 1150..1345 CDD:239860 56/228 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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