DRSC/TRiP Functional Genomics Resources

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Protein Alignment tum and RhoGAP1A

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001284725.1 Gene:RhoGAP1A / 5740235 FlyBaseID:FBgn0025836 Length:1404 Species:Drosophila melanogaster


Alignment Length:717 Identity:151/717 - (21%)
Similarity:243/717 - (33%) Gaps:247/717 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 EEFLRFLRMFEQYH-------------EKCAGYAAETARIQN------ELDKSLTKMGDLEGK-- 69
            |.|.|...||:.|.             :||:....:..:|.:      :.::||| :.||..|  
  Fly   752 EPFRRLAEMFDLYSAFLHNYKNAIETVKKCSANNPQFKKIVSTIVLNLQTEQSLT-LEDLLHKPV 815

  Fly    70 --------------------------LFHARRIIDMEIKARRQAEHERDAMESKIMAVADLLRHE 108
                                      |..|::||.|.:. :....::|..:||           .
  Fly   816 ARVQINALVFNDLLRETPNAHPDHQPLRQAQKIIQMFLN-QFNVVNQRLPIES-----------N 868

  Fly   109 RNLNNETRDKLAFLHTLPSSRKRKSL------NAVREDKSYGDINSTGSL-----LSDLSITHSE 162
            |||....|:.. .:..:...||.:.|      .|..:.|:.|.......|     |.|:||....
  Fly   869 RNLRRMVRNSF-IVELVDGHRKLRHLFLFNDVIACAKYKALGRDRIDYELKWFIPLKDVSIYEEA 932

  Fly   163 DDFLDVRTSKSWREHRP---SLPKNQIPSVGNKRSRLSTGLNGSMSGTTPTTGKSRRSSVGIGVE 224
            |..:::      :|..|   |..|..:.||   |.:|:..:..|.||...:..|.||....:   
  Fly   933 DPAVEL------KESSPANISQVKRNLRSV---RDQLAMEVANSGSGAFRSGDKYRRKLADL--- 985

  Fly   225 QHTVDVGQGAERFCATTKVTIPQDGQGVIRAESTIESLPVIAGNERIGDGLSSTPRR-------- 281
                                   :.|.|:...:.:..|...|.|:.|...|||...|        
  Fly   986 -----------------------ESQLVLATPNLVLRLGNKANNKTITFFLSSDFERTQWIDSIL 1027

  Fly   282 SVLKEATAPPLTPVN---------AMAPHVVAESGTPLQHRPLMRNHTFSQKTFLRGDNCVQCQK 337
            |:.::...|....:|         ||...:..|.|:     .||||  .:.::.|.||       
  Fly  1028 SLKQKCNLPGANTINSLEVTAFIVAMQKGMKTEMGS-----YLMRN--TNDESLLVGD------- 1078

  Fly   338 RIRFGAVGL----RCRDCPVRCHID--------------CR------------------------ 360
             :..|..||    :..|..:...:|              ||                        
  Fly  1079 -LYMGVHGLEGLEQANDLYICVEVDSYGHYFRKATTKKICRSQTPLWNESFMLELEGSQNVRILL 1142

  Fly   361 --------------YLLTVSCVPQTGTPTTKTMT-----GYVTDFAP------SIAP-------- 392
                          ..|::|.:.:|..|.:..:|     |....|.|      |..|        
  Fly  1143 YEAKERPLLKAKHILKLSLSWLTETTQPKSIKLTETLELGCSFRFIPGELFRGSTKPGALFGAKM 1207

  Fly   393 ---------MIPALIVHCVNEIEARGLTEVGLYRLSSSEREYKALKEQFLRG--KATPHLGNTDI 446
                     .||.:|..|:.|:|.||:.|||.||:|.|..:...||:.|...  :|...|...||
  Fly  1208 SQVLKREKRDIPFIIGACIREVERRGMLEVGCYRVSGSASDLAKLKKAFESDAYEAEQLLREVDI 1272

  Fly   447 YVLCCCVKDFLRSLTEPLIPTSQ----WKDFANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAFL 507
            :.:...:|.|||.|.|.|. |.|    :.|..:|..|.:..|..:.|:|..::|||||:.::..:
  Fly  1273 HSVTGILKTFLRELPEALF-TDQLYPRFFDTFSAFSNNNESTRINELLKVFEELPQANKASITSI 1336

  Fly   508 ILHFQRIAQCPV-VLMPIDNISLIFGPTI-------------VGYSTPDPDQHAIYTEVFTQKQV 558
            :.|..|:.:... ..|.:.|::::||||:             :..||.|....|.....|.|.::
  Fly  1337 LDHLIRVHEKETDNKMSLHNLAMVFGPTLLRPGQTQVKQKDPLAASTVDVMAQAGILYCFLQARI 1401

  Fly   559 MK 560
            .|
  Fly  1402 KK 1403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 11/103 (11%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 62/223 (28%)
RhoGAP1ANP_001284725.1 RhoGEF 675..857 CDD:214619 20/106 (19%)
PH_BCR_arthropod 851..1037 CDD:270174 45/233 (19%)
C2 1079..1187 CDD:301316 13/107 (12%)
RhoGAP 1203..1398 CDD:295372 55/195 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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