DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and arhgap36

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:XP_009301716.1 Gene:arhgap36 / 559813 ZFINID:ZDB-GENE-060616-298 Length:675 Species:Danio rerio


Alignment Length:641 Identity:116/641 - (18%)
Similarity:207/641 - (32%) Gaps:229/641 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 PEEEFLRFLRMFEQYHEKCAGYAAETARIQNELDKSLTKMGDL---EGKLFH-ARRIIDMEIKAR 84
            ||:...:.::.:.......|....::.|:|....:||:::...   |..|:| .||.:|.:|...
Zfish    18 PEDPVRQDMQFYYVGDHTWATMLGQSVRLQPVAIQSLSELERARLQEVALYHLERRDLDFKISIP 82

  Fly    85 RQAEHERDAMESKIMAVADLLRHERNLNNETRDKLAFLHTLPSSRKRKSLNAVREDKSYGDINST 149
            |:....|.::..|.    |....|:. :.|:..| ||  ::|.|:      .:..|.:|..... 
Zfish    83 REIRKRRKSLRRKF----DSFSKEKK-DRESAPK-AF--SIPLSQ------VIANDLAYKQRQD- 132

  Fly   150 GSLLSDLSITHSEDDFLDVRTS------KSWREHRPSLPKNQIPSVGNK---RSRLSTGLNGSMS 205
                   ::..|..|.||:..|      :.|:::            ||:   ::.||.|     :
Zfish   133 -------ALKESRRDCLDLEASVLHFRAEKWQQN------------GNRPLGKTVLSPG-----A 173

  Fly   206 GTTPTTGKSRRSSVGIGVEQHTVDVGQGAERFCATTKVTIPQDGQGVIRAESTIESLPVIAGNER 270
            .::|.            :|.|:   ...:..|...|..|..:.|..|......:||      ..|
Zfish   174 ASSPV------------LELHS---KPPSSAFMDNTSRTHRRGGMSVDSISDMVES------QSR 217

  Fly   271 IGDGLS-STPRRSVLKEATAPPLTPVNAMAPHVVAESGTPLQHRPLMRNHTFSQKTFLRGDNCVQ 334
            :.:.|. |.|....:|:|               ...:...|...|:.|                 
Zfish   218 LLEALQLSHPNELEMKKA---------------AGRTQAKLSLNPIYR----------------- 250

  Fly   335 CQKRIRFGAVGLRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTKTMTGYVTDFAPSIAPMIPALIV 399
                                                                      .:|.::.
Zfish   251 ----------------------------------------------------------QVPRVVE 257

  Fly   400 HCVNEIEARGLTEVGLYRLSSSEREYKALKEQFLRGKATPHLGNTDIYVLCCCVKDFLRSLTEPL 464
            .|.|.|:..||..:|::|:.||::..:.|:|.|..|..........::.:...:|:|||.:.:||
Zfish   258 RCCNHIQTYGLQTLGIFRVGSSKKRVRQLREDFDNGIDVVLDEEHSVHDVAALLKEFLRDMPDPL 322

  Fly   465 IPTSQWKDF--ANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAFL--ILHF-------------Q 512
            :|...::.|  ||.::..|..:   .|.:.:..||..|.|||..|  :||.             |
Zfish   323 LPRELYRAFLHANLLRGADQLS---YLQQLLYLLPPCNCDTLLRLLTLLHTVQENANSSTGPNKQ 384

  Fly   513 RIAQCPVVLMPIDNISLIFGPTI-----------------VGYSTP---------DPDQHAIYTE 551
            .|:...   |...|:::||||.:                 :..||.         ...||.....
Zfish   385 EISGNK---MTAANLAVIFGPNLLQKERGSERELSPQALGIEDSTAVISVTLMLIQNHQHLFMVS 446

  Fly   552 VFTQKQVMKALLELPVSFWEQYIVIDPTRTPATVIKRVPSNKNDLLSLYATPFKGG 607
            ...|::|:.:|::                |...||..:...|....||...|..||
Zfish   447 AELQQEVLMSLIQ----------------TDPDVIDYLLRRKLSSSSLTVEPDSGG 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 0/47 (0%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 50/231 (22%)
arhgap36XP_009301716.1 RhoGAP_ARHGAP6 244..449 CDD:239841 49/285 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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