DRSC/TRiP Functional Genomics Resources

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Protein Alignment tum and racgap1

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001001236.1 Gene:racgap1 / 407917 XenbaseID:XB-GENE-943983 Length:629 Species:Xenopus tropicalis


Alignment Length:646 Identity:214/646 - (33%)
Similarity:323/646 - (50%) Gaps:99/646 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FDDLRRCMQVLTDGTPEEEFLRFLRMFEQYHEKCAGYAAETARIQNELDKSLTKMGDLEGKLFHA 73
            |:.|.|.:..|.:|. |.:|::..:.||.:..|......|..:.:..|.|:.|:...||.||.||
 Frog    12 FEQLMRQVDGLNEGI-EPQFIQLAKNFEDFRRKWQKSEQELIKNKEMLMKTETERSALEVKLKHA 75

  Fly    74 RRIIDMEIKARRQAEHERDAMESKIMAVADLLRHERN----LNNETRDKLAFLHTLPSSRKRKSL 134
            |..:|:|||.|::||.|.:.:|.:|..:.:||..:.:    |:.:.|..||||    ::|.:.|.
 Frog    76 RNQVDVEIKRRQRAEVECEKLERQIQLIRELLMCDPSGSIQLSEQQRSALAFL----NNRTQMSA 136

  Fly   135 --NAVREDKSYGDINSTGSLLSDLSITHSEDDFLDVRTS-------KSWREHRPSLPKNQIPSVG 190
              |..|.   ...|:.:.|:|||:|...:||. ||..:|       |...:.|.|....:.|.|.
 Frog   137 DGNGTRR---LSTIDESASILSDISFDKTEDS-LDWDSSLVRNVRLKKREKRRSSRQHTEGPPVP 197

  Fly   191 NKRSRLSTGLNGSMSGTTPTTGKSRRSSVGIGVEQHTVDVGQGAERFCATTKVTIPQDGQGVIRA 255
            :||:|                      |:.|.::       |..|...|.|.:|:|.:| |.|..
 Frog   198 SKRNR----------------------SIEIAMD-------QANESIIAKTTLTVPNNG-GPIDV 232

  Fly   256 ESTIESLPVIAGNERIGDGLSSTPRRSVLKEATAPPLTPVNAMAPHVVAESG------TPLQHRP 314
            .|:||::|......|              :..|..|....:::....:...|      ||  ...
 Frog   233 VSSIETVPYYNTRSR--------------RTGTLQPWNSDSSLVSRHLDHKGEADTCRTP--QNG 281

  Fly   315 LMRNHTFSQKTFLRGDNCVQCQKRIRFGAVGLRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTKTM 379
            .||.|.|..||.::.::||.|.|||:||.:.|:||||.|..|.:||....:.|:|..|....:..
 Frog   282 GMRLHEFVSKTVIKPESCVPCGKRIKFGKISLKCRDCRVVAHPECRERCPLPCIPTVGGTPVRIG 346

  Fly   380 TGYVTDFAPSIAPMIPALIVHCVNEIEARGLTEVGLYRLSSSEREYKALKEQFLRGKATPHLGNT 444
            .|.:.||||..:||||.:|||||:||:.|||.|.||||:|..:|..|.|||:|||||:.|.|...
 Frog   347 EGTLADFAPLTSPMIPPIIVHCVSEIQQRGLHETGLYRISGCDRTVKELKEKFLRGKSVPLLSKV 411

  Fly   445 -DIYVLCCCVKDFLRSLTEPLIPTSQWKDFANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAFLI 508
             ||:.:|..:|||||:|.|||:.....:.|..|.:..|.|::...:.::|.:||..||||||:|:
 Frog   412 DDIHAVCGFLKDFLRNLKEPLLTFRLNRVFMEAAEITDEKSSIAAIYQAVDELPAPNRDTLAYLM 476

  Fly   509 LHFQRIAQCPVVLMPIDNISLIFGPTIVGYSTPDPDQHAIYTEVFTQKQVMKALLELPVSFWEQY 573
            :|.||:||.|...|.:.|:|.:||||:||::.||||...|..:...|..|::.|:.||..||.|:
 Frog   477 IHLQRVAQSPDCKMDVSNLSKVFGPTLVGHAVPDPDPMTILQDTRRQPMVVERLMLLPAEFWNQF 541

  Fly   574 IV---IDPT---------RTPATVIKRVPSNKNDLLSLYATPFKGGTIKKRKFYGTPPASA 622
            ::   |||.         .||     |.|..:..:|....||       :::|..||.:|:
 Frog   542 MMVENIDPNHIIENANVFNTP-----RTPDARVSMLGPLTTP-------EQQFNKTPSSSS 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 21/47 (45%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 88/189 (47%)
racgap1NP_001001236.1 SbcC <8..107 CDD:223496 31/95 (33%)
C1 286..334 CDD:237996 21/47 (45%)
RhoGAP_MgcRacGAP 345..538 CDD:239847 88/192 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 140 1.000 Domainoid score I4716
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H8077
Inparanoid 1 1.050 301 1.000 Inparanoid score I2638
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D184774at33208
OrthoFinder 1 1.000 - - FOG0004815
OrthoInspector 1 1.000 - - otm48467
Panther 1 1.100 - - LDO PTHR46199
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4412
SonicParanoid 1 1.000 - - X3396
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1010.190

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