DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and RhoGAP18B

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_573352.2 Gene:RhoGAP18B / 32898 FlyBaseID:FBgn0261461 Length:1317 Species:Drosophila melanogaster


Alignment Length:636 Identity:125/636 - (19%)
Similarity:213/636 - (33%) Gaps:199/636 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 NELDKSLTKMGDLEGKLFHARRIIDMEIKARRQAEHERDAMESKIMAV-ADLLRHERNLNNET-R 116
            :::|.....:||.:..|               .::.:.|.|..:..|| |..:||:.:.:..| |
  Fly   741 DDVDDEEEDLGDYDESL---------------PSDADPDVMALQAAAVFAAGVRHKLSTSTLTKR 790

  Fly   117 DKLAFLHTLPS------------------SRKRK-------SLNA--VREDKSYGDINSTGS--- 151
            .|:.....|||                  ||:.|       ||.:  .....:.|.|:||||   
  Fly   791 SKMMMPTPLPSPTASMDHGAWETDMEFMYSRESKEEADETLSLGSTVTNSTATLGSISSTGSSVT 855

  Fly   152 ----------------------LLSDLSITHSEDD-------FLDVRTSK-----SWREHRPSLP 182
                                  :|.::.|.:|:.|       |.|...|.     ..|..||:.|
  Fly   856 GQPKDTPKDLPADQQPSVVVHPILRNICIFYSQKDPKKYSAIFYDYHLSLVHQRFMTRIRRPAPP 920

  Fly   183 ---------------------------------KNQIPSVGN------KRSRLSTGLNGSMSGTT 208
                                             .|..|::..      :|:.|:.|......|..
  Fly   921 PPAQLATSNTTSLAPRSDDSGCSCEAEDSYNHQHNPTPAIPKPLKEEWERAVLAAGAVAGKRGVA 985

  Fly   209 PTTGKSRR----------SSVGIGVEQHTVDVGQGAERFCATTKVTIPQDGQGVIRAESTIESLP 263
            |.||:..|          .|| :...:...||.      |...:..:......::||:...|.  
  Fly   986 PRTGRKLRVRSNARLLLTDSV-LAWRETLQDVN------CCEDEEDMIVPVTDILRAQQIQED-- 1041

  Fly   264 VIAGNERIGDGLSSTPRRSVLKEATAPPLTPVNAMAPHVVAESGTPLQHRPLMRNHTFSQKTFLR 328
                ||     :..|.:.::|:...:   ..:..:......:....:::|..|:....|....:.
  Fly  1042 ----NE-----VQQTQQSTILQRYKS---VSIGNLLDLPGEDDKKSIKNRMRMKFAVNSNVFRIN 1094

  Fly   329 GDNCVQCQKRIRFGAVGLRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTK---TMTGYVTDFAPSI 390
            .....:.:.|.|.|.|.....|       :.:|       |....|.:.   .||.:        
  Fly  1095 RSPKSEKKSRSRRGQVNSLYLD-------EQKY-------PLFAAPLSALELNMTDH-------- 1137

  Fly   391 APMIPALIVH-CVNEIEARGLTEVGLYRLSSSEREYKALKEQFLRGKAT----PH-LGNTDIYVL 449
             |.:|..:|. |....:...:.:.||||.|.:    |.|.:: ||.|.|    |. |...||:.|
  Fly  1138 -PNVPRFVVDVCAYIEQPECIEQDGLYRASGN----KVLVDE-LRKKLTHVYDPRWLKTDDIHTL 1196

  Fly   450 CCCVKDFLRSLTEPLIPTSQWKDFANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAFLILHFQRI 514
            ....|.|.|.||.|||....::....:: |.|  .|.:.:..:...:|:.||.||.|||.|..|:
  Fly  1197 TSLHKQFFRELTSPLITQEAYERLGRSL-NDD--AAIERMSLAFDDMPEPNRSTLRFLIRHLTRV 1258

  Fly   515 AQCPVV-LMPIDNISLIFGPTIVGYSTPDPDQHAIYTEVFTQKQVMKALLE 564
            |..... .||..|:::::||.::       ..:.|..::.....:.|.|:|
  Fly  1259 AAASASNRMPSTNLAIVWGPCLL-------SANQIQLDIGRMNMLAKVLIE 1302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 7/47 (15%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 51/191 (27%)
RhoGAP18BNP_573352.2 RhoGAP 1141..1289 CDD:279014 47/162 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3564
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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