DRSC/TRiP Functional Genomics Resources

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Protein Alignment tum and racgap1

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_955925.1 Gene:racgap1 / 323197 ZFINID:ZDB-GENE-030131-1917 Length:654 Species:Danio rerio


Alignment Length:687 Identity:223/687 - (32%)
Similarity:331/687 - (48%) Gaps:124/687 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FDDLRRCMQVLTDGTPEEEFLRFLRMFEQYHEKCAGYAAETARIQNELDKSLTKMGDLEGKLFHA 73
            |:.||....||.:.. |.:|::....||....:......|....:..|.|:.|:.|.||.||.||
Zfish    12 FESLRAQADVLNESI-EPQFIQLAINFEDNRRRWLRLEQELNACKEVLTKAETERGALEVKLKHA 75

  Fly    74 RRIIDMEIKARRQAEHERDAMESKIMAVADLLRHERN-----LNNETRDKLAFLHTLPSSRKRKS 133
            |..:|:||:.|::||.:...::.:|..:.:||..|.:     ||.|.|..||||:.  .|:...:
Zfish    76 RNQVDVEIRRRQKAESDCAKLDRQIQLIRELLVSEGSSSSIQLNEEQRSALAFLNA--RSQNPAN 138

  Fly   134 LNAVREDKSYGDINSTGSLLSDLSITHSEDDFLD-----VRT--SKSWREHRPSLPKNQIPSVGN 191
            ||..|.   ...|:.:.|:|||:|...: ||.||     :||  .|..::.|.|....:.|....
Zfish   139 LNTSRR---LATIDESASILSDISYDKT-DDSLDWDSSAIRTVRLKKRQKRRSSRNHTEGPPAAA 199

  Fly   192 KRSRLSTGLNGSMSGTTPTTGKSRRSSVGIGVEQHTVDVGQGAERFCATTKVTIPQDGQGVIRAE 256
            ||||              :||::..               :|.|...|.|.||:|.|| |.|.|.
Zfish   200 KRSR--------------STGRTSE---------------KGNESLVAKTTVTVPADG-GPIEAV 234

  Fly   257 STIESLP---------VIAGNER-IGDGLS------------STPRRSVLKEATAPPLTPVNAMA 299
            :|:|::|         |...:|: |....|            |.....|.|:.:.|     ||  
Zfish   235 TTVEAVPYWTRSRRKTVFCSSEQCISLNYSSAAVEWDTVDTDSVQSMDVFKQPSLP-----NA-- 292

  Fly   300 PHVVAESGTPLQHRPLMRNHTFSQKTFLRGDNCVQCQKRIRFGAVGLRCRDCPVRCHIDCRYLLT 364
             ...||..|| |....:|.|.|..||.::.::||.|.|||:||.:.|:||||.|..|.:||....
Zfish   293 -ENRAEPSTP-QGNGGVRLHEFISKTVIKPESCVPCGKRIKFGKISLKCRDCRVVAHPECRERCP 355

  Fly   365 VSCVP-QTGTPTTKTMTGYVTDFAPSIAPMIPALIVHCVNEIEARGLTEVGLYRLSSSEREYKAL 428
            :.|:| .|||| .|...|.:.::..:.:||||:|:|||:||||.|||.|.||||:|.|:|..|.|
Zfish   356 LPCIPSMTGTP-VKIGEGTLANYVSNTSPMIPSLVVHCINEIEQRGLHETGLYRVSGSDRVVKDL 419

  Fly   429 KEQFLRGKATPHLGNT-DIYVLCCCVKDFLRSLTEPLIPTSQWKDFANAVQNPDTKTAQDMLVKS 492
            ||:|||||..|.|... ||:.:...:|||||:|.|||:.....:.|.:|.:..|...:..::.::
Zfish   420 KEKFLRGKTVPLLSKVEDIHAITGLLKDFLRNLKEPLLTFRLNRAFMDAAELSDDDNSIALMYQN 484

  Fly   493 VKQLPQANRDTLAFLILHFQRIAQCPVVLMPIDNISLIFGPTIVGYSTPDPDQHAIYTEVFTQKQ 557
            :..|||.:||||||||:|.||:||.|...|.|.|::.:|||||||::..:|:...|..:...|.:
Zfish   485 ISDLPQPHRDTLAFLIIHLQRVAQSPATKMDITNLARVFGPTIVGHAVSNPEPMTILQDTKRQPR 549

  Fly   558 VMKALLELPVSFWEQYIVID----------------------------PTRTPATVIKRVPSN-- 592
            |::.||.|||.:|.|:::.|                            |..||...:.:.||:  
Zfish   550 VVERLLSLPVEYWSQFMISDHDHARNDHMIIENANVHTTPDQKMSMFGPITTPDQQMSKTPSSSS 614

  Fly   593 -----KNDLLSLYATPFK------GGTIKKRKFYGTP 618
                 ||..|:.....|.      ....::..|:.:|
Zfish   615 LSQRMKNATLNAITPKFSSRSRATAAVPRQGNFFASP 651

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 21/47 (45%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 85/189 (45%)
racgap1NP_955925.1 C1 310..358 CDD:237996 21/47 (45%)
RhoGAP_MgcRacGAP 369..562 CDD:239847 85/192 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 143 1.000 Domainoid score I4591
eggNOG 1 0.900 - - E1_KOG3564
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8077
Inparanoid 1 1.050 299 1.000 Inparanoid score I2684
OMA 1 1.010 - - QHG49807
OrthoDB 1 1.010 - - D184774at33208
OrthoFinder 1 1.000 - - FOG0004815
OrthoInspector 1 1.000 - - otm26367
orthoMCL 1 0.900 - - OOG6_106233
Panther 1 1.100 - - LDO PTHR46199
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4412
SonicParanoid 1 1.000 - - X3396
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.870

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