DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tum and Arhgap21

DIOPT Version :9

Sequence 1:NP_610912.2 Gene:tum / 36538 FlyBaseID:FBgn0086356 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_001178622.1 Gene:Arhgap21 / 307178 RGDID:1311028 Length:1952 Species:Rattus norvegicus


Alignment Length:619 Identity:135/619 - (21%)
Similarity:223/619 - (36%) Gaps:172/619 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 RRQAEHERDAMESKIMAVADLLRHERN------LNNETRD-KLAFLHTLPSSRKRKSLNAVREDK 141
            |||..|:::::....:......:.||:      |::...| ||:|.|.       .||..::...
  Rat   856 RRQLSHDQESVGPPSLDGQHTSKTERSKSYDEGLDDYREDAKLSFKHV-------SSLKGIKIAD 913

  Fly   142 SYGDINSTGSLLSDLSITHSEDDFLDVRTSKSWREHRPSLPKNQIPSVGNKRSRLSTGLNGS--- 203
            |......:||....     |.:.|.|. ..:.|.:.|        |.|.:|..|    :.||   
  Rat   914 SQKSSEDSGSRKDS-----SSEVFSDA-AKEGWLQFR--------PLVTDKGKR----VGGSIRP 960

  Fly   204 -------MSGTTPTTGKSRRSSV-------GIGVEQHTVDVGQGAER----FCATTKVTIPQDGQ 250
                   :.|.:....|.||...       .|.|....:|:.....:    |..||     .|.:
  Rat   961 WKQMYVVLRGHSLYLYKDRREQTTPSEEEQPISVNACLIDISYSETKRRNVFRLTT-----SDCE 1020

  Fly   251 GVIRAESTIESLPVI--------AGNERIG---------------------DGLSSTPRRSV--- 283
            .:.:||...:.|..|        ...|..|                     :.|..|||:|:   
  Rat  1021 CLFQAEDRDDMLAWIKTIQESSNLNEEDTGVTNRDLISRRIKEYNSLLSKTEQLPKTPRQSLSIR 1085

  Fly   284 --LKEATAPPLTPVNAMAPHVVAESGTPLQHRPLMRNHTFSQK---TFLRGDNCVQC----QKRI 339
              |..|.:.|.|    .:||...|..   :.:.|.::.|...|   |:.||...:..    :|..
  Rat  1086 QTLLGAKSEPKT----QSPHSPKEES---ERKLLSKDDTSPPKDKGTWRRGIPSIVRKTFEKKPA 1143

  Fly   340 RFGAVGLRCRDCPVRCHIDCRYLLTVSCVPQTGTPTTKTMTGYVTDFAPSIAPMIPALIVHCVNE 404
            ..|..|:|..||| ..|.: ||                                ||.::..|...
  Rat  1144 ATGTFGVRLDDCP-PAHTN-RY--------------------------------IPLIVDICCKL 1174

  Fly   405 IEARGLTEVGLYRLSSSEREYKALKEQFLRGKATPHLGN---TDIYVLCCCVKDFLRSLTEPLIP 466
            :|.|||...|:||:..:.....:::|:..:|.|...:.:   .|:.|:...:|.|.|.|.|||..
  Rat  1175 VEERGLEYTGIYRVPGNNAAISSMQEELNKGMADIDIQDDKWRDLNVISSLLKSFFRKLPEPLFT 1239

  Fly   467 TSQWKDFANAVQNPDTKTAQDMLVKSVKQLPQANRDTLAFLILHFQRIAQ-CPVVLMPIDNISLI 530
            ..::.||..|.:..|.......|.:.:..||:.:.:||.||..|.:.:|: .....|...|::::
  Rat  1240 NDKYADFIEANRKEDPLDRLRTLKRLIHDLPEHHFETLKFLSAHLKTVAENSEKNKMEPRNLAIV 1304

  Fly   531 FGPTIVGYS--------TPDPDQHAIYTEV-------FTQKQVMKALLELPVSFWEQYIVIDPTR 580
            ||||:|..|        |..|||:.|...:       ||::..     |.|::..::...:|...
  Rat  1305 FGPTLVRTSEDNMTHMVTHMPDQYKIVETLIQHHDWFFTEEGA-----EEPLTAVQEENTVDSQP 1364

  Fly   581 TP-----ATVIKR---VPSNKNDLLSLYATPFKG 606
            .|     .|.|.|   :|.:.:|..:..:|..||
  Rat  1365 VPNIDHLLTNIGRTGVLPGDVSDSATSDSTKSKG 1398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tumNP_610912.2 C1 319..367 CDD:237996 15/54 (28%)
RhoGAP_MgcRacGAP 381..570 CDD:239847 52/207 (25%)
Arhgap21NP_001178622.1 PDZ_signaling 52..159 CDD:238492
PH_ARHGAP21-like 936..1045 CDD:269955 23/125 (18%)
PH 937..1042 CDD:278594 23/121 (19%)
RhoGAP_ARHGAP21 1147..1342 CDD:239860 56/228 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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